BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913416

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G35537.1 | Symbols:  | Defensin-like (DEFL) family protein |...   372    9e-103


> AT1G35537.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:13105206-13105570 REVERSE LENGTH=246
Length=246

 Score =  372 bits (201),  Expect = 9e-103
 Identities = 232/247 (94%), Gaps = 2/247 (1%)
 Strand=Plus/Plus

Query  1    ATGGTTTCATCAAGAAAATGTGTTTTCCTTGTGTTCTTATGTCTGGTTGTTCTCTTGATT  60
            |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct  1    ATGGTTTCATCAAGGAAATGTGTTTTCCTTGTGTTCTTATGTATGGTTGTTCTCTTGAAT  60

Query  61   CCAAAATCTACAAAAGCGAAAGATATTGATGGAAGGAAGCCTCTTTTGATAGGTACTTGC  120
            ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct  61   CCAAAATCTACAAAAGCGAAAGATATTGATGGAAGGAAGCCCCTCTTGATAGGTACTTGC  120

Query  121  GTAGAGTTTCCAGCAGAAAGATGCAATAAGACATGCATTGATTCAAATTTTGCTAGTGGA  180
             ||||||||||| |||||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct  121  ATAGAGTTTCCAACAGAAAAATGCAATAAGACATGCATTGAATCAAATTTTGCTGGTGGA  180

Query  181  AAATGCGTTCATGTTGGTCAAAGCCTTGACTTTGTATGTGTTTGTTATCC-AAAATATAA  239
            |||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct  181  AAATGCGTTCATATTGGTCAAAGCCTTGACTTTGTATGTGTTTGTT-TCCCAAAATATTA  239

Query  240  AATATAA  246
             ||||||
Sbjct  240  TATATAA  246



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11159440278


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5