BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913428
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35630.1 | Symbols: | Protease-associated (PA) RING/U-box z... 1203 0.0
AT1G35625.1 | Symbols: | RING/U-box superfamily protein | chr1... 763 0.0
> AT1G35630.1 | Symbols: | Protease-associated (PA) RING/U-box
zinc finger family protein | chr1:13162966-13164512 REVERSE
LENGTH=1060
Length=1060
Score = 1203 bits (651), Expect = 0.0
Identities = 870/972 (90%), Gaps = 30/972 (3%)
Strand=Plus/Plus
Query 1 ATGAATTGTAGGTT-GATTACAATCATGTTTCTGTTGGTAATTTCTCAGCTGGCTTCGGC 59
||||| | || ||| |||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 29 ATGAACTATA-GTTGGATTACAATCATGTCTCTGTTGGTAATTTGTAAGCTGGCTTCGGC 87
Query 60 CAAAGTAGTGTTGATCGGGGAAAACACAATTCTCTCCTTTGAAT-ATGTCGAAGCGACTT 118
|||||||||||||||||| ||||||||||||| ||||||| || ||||||| || ||||
Sbjct 88 GAAAGTAGTGTTGATCGGGAAAAACACAATTCTATCCTTTG-ATGATGTCGAGGCAACTT 146
Query 119 TCACTCCAATTGTTAGAAGA-TCGGGGGAATATGG-ATCATTATACGCTGCAGAGCCTCT 176
|||||||||||||||||| | |||||||||| ||| || || |||| ||||||||||||
Sbjct 147 TCACTCCAATTGTTAGAA-ACTCGGGGGAATGTGGAAT-TTTGTACGTTGCAGAGCCTCT 204
Query 177 TGATGCGTGCTCGGATTTAAACAACCTGGCGGAAAAAGGATCAAGGTTTAGGTCCTCTTA 236
||| || ||||||||| ||| |||| ||||||||||| |||||| || ||||||||||||
Sbjct 205 TGAGGCATGCTCGGATATAACCAACATGGCGGAAAAAAGATCAAAGTATAGGTCCTCTTA 264
Query 237 TGTATTGATCGTTCGTGGTGGATGTAGTTTTGAGGAAAAAGTTATAAAAGCACAGAAAGC 296
|||||||||||| | |||||| ||||||||||||||||| |||| ||| || ||||||||
Sbjct 265 TGTATTGATCGTCCTTGGTGGCTGTAGTTTTGAGGAAAAGGTTAGAAAGGCGCAGAAAGC 324
Query 297 TGGATACAAAGCTGCGATTGTCTATAACAATGGATATGATGAGCTCTTAGTACC--T--- 351
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 325 TGGATACAAAGCTGCGATTGTCTATAACGATGGATATGATGAGCTCTTAGTACCTATGGC 384
Query 352 A-GAAATTCATCTGGTGTGCATATACATGGCTTGCTTGTTACAAGAGCATCAGGGGAGGT 410
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 385 AGGAAATTCATCTGGTGTGGATATACATGGCTTGCTTGTTACAAGAGCATCAGGGGAGGT 444
Query 411 ACTTAAAGGGTATTCGGGT-A-GATCCGAGATGGAGCTTTGGCTCATCCCGGGATTCGGG 468
||||||||||| ||| | | || | |||||| ||||||||||||||||||||||||||
Sbjct 445 GCTTAAAGGGTACGCGGATCAAGA-C-GAGATGAAGCTTTGGCTCATCCCGGGATTCGGG 502
Query 469 ATTTCA-CTGTGGTCCATCATGGGTATCACTTTCATATCTTTACTCGCCGTGTCTGCTGT 527
|||||| || ||||||||||||||||| || |||||||||||||||||| |||||||| |
Sbjct 503 ATTTCATCT-TGGTCCATCATGGGTATTACATTCATATCTTTACTCGCCATGTCTGCTAT 561
Query 528 TCTAGCCACTTGTTTCGTTTTCCATATGCATCGAATTAGACGGAGTGTGAGGGATTTACA 587
||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct 562 TCTAGCCACTTGTTTCGTTGTCCGTAGGCATCAAATTAGACAGAGTGTGAGGGATTTACC 621
Query 588 TTTACCCTATGGTGGCCAAGGACTTTCTCGTATGCCTAGAAAATTGTTGCAAAGCATGCC 647
|| |||||||||||||||||||| ||||||| ||| | |||||||||||||||||
Sbjct 622 ---AC---ATGGTGGCCAAGGACTTTCTTGTATGCCAAGAGACTTGTTGCAAAGCATGCC 675
Query 648 GACTGAACTATATACCGGTGTTCTTGAAGAAGGTTCGACTTCGGTTACTTGTGCAATATG 707
||||||| |||||| |||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct 676 GACTGAAGTATATAGCGGTGTTCTTGAAGAAAGTTCAACTTCGGTTACTTGTGCTATATG 735
Query 708 CATTGATGATTATTGCGTTGGTGAAAAACTCAAGA-TCCTACCTTGCAAACACAAATTTC 766
|| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 736 TATCGATGATTATTGCGTTGGTGAAAAACTCC-GAATCCTACCTTGCAAACACAAATATC 794
Query 767 ATGTGGTGTGTATCGATTCTTGGCTCGGACATTGGAGATCCTTTTGTCCGGTTTGTAAAC 826
||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 795 ATGCGGTGTGTATCGATTCTTGGCTCGGACGTTGTAGATCCTTTTGTCCGGTTTGTAAAC 854
Query 827 GCA-TGCCAAGAACAGGAAATGGTGTTCCACCAGCGTCAGCAACAACACCTCTGCTTTCT 885
| | |||||||||||||||| |||||||||||| |||| ||||||||||||| |||||
Sbjct 855 AAAAT-CCAAGAACAGGAAATGATGTTCCACCAGCATCAGAAACAACACCTCTGATTTCT 913
Query 886 CCTAGCCCAAACTCTATTACTTCACTACAATCGTTTTATGATCTACCAATTGCTGTCAAA 945
|||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 914 CCTAGCCCGAACTCTATTACTTCACTACAATCGTTTTATGATCTACCAATAGTTGTCAGA 973
Query 946 GTATATCTGTAA 957
||||||||||||
Sbjct 974 GTATATCTGTAA 985
> AT1G35625.1 | Symbols: | RING/U-box superfamily protein | chr1:13158466-13160245
REVERSE LENGTH=974
Length=974
Score = 763 bits (413), Expect = 0.0
Identities = 596/680 (88%), Gaps = 30/680 (4%)
Strand=Plus/Plus
Query 293 AAGCTGGATACAAAGCTGCGATTGTCTATAACAATGGATATGATGAGCTCTTAGTAC--C 350
|||||||||||||||||||||| ||||||||| || ||||||| |||||||||||||
Sbjct 310 AAGCTGGATACAAAGCTGCGATCGTCTATAACGATAGATATGAGGAGCTCTTAGTACGTA 369
Query 351 T---A-GAAATTCATCTGGTGTGC-ATATACATGGCT-TGCTTGTTACAAGAGCATCAGG 404
| | |||||||||||||||| | |||||||||| | |||||||||||||| |||||||
Sbjct 370 TGGCAGGAAATTCATCTGGTGT-CTATATACATGG-TGTGCTTGTTACAAGAACATCAGG 427
Query 405 GGAGGTACTTAAAGGGTATTCGGGTAGATCCGAGATGGAGCT-TTGGCTCATCCCGGGAT 463
|||||||||||||| |||| | || || | ||||||||||| || ||||||||||||||
Sbjct 428 GGAGGTACTTAAAGAGTATACCAGTCGAGCTGAGATGGAGCTCTT-GCTCATCCCGGGAT 486
Query 464 TCGGGATTTCA-CTGTGGTCCATCATGGGTATCACTTTCATATCTTTACTCGCCGTGTCT 522
||||||||||| || ||||| ||||||| |||||||||| |||| ||||||| | | |||
Sbjct 487 TCGGGATTTCATCT-TGGTCAATCATGGCTATCACTTTCGTATCGTTACTCGTCATTTCT 545
Query 523 GCTGTTCTAGCCACTTGTTTCGT-TTTCCATATGCATCGAATTAGAC-GGAGTGTGAGGG 580
|| || |||||| ||| |||| | | ||| || |||||||||||||| | | ||||||||
Sbjct 546 GCCGTCCTAGCCTCTTATTTC-TCTGTCCGTAGGCATCGAATTAGACAGCA-TGTGAGGG 603
Query 581 ATTTACATTTACCCTATGGTGGCCAAGGACTTTCTCGTATGCCTAGAAA-A-TTGTTGCA 638
||||||| | | ||||||||||||||| |||||||||||| | ||| | ||||||||
Sbjct 604 ATTTACA--T---C-ATGGTGGCCAAGGACATTCTCGTATGCC-A-AAAGACTTGTTGCA 655
Query 639 AAGCATGCCGACTGAACTATATACCGGTGTTCTTGAAGAAGGTTCGACTTCGGTTACTTG 698
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 656 AAGCATGCCGACTGAAGTATATACCGGTGTTCTTGAAGAAGGTTCGACTTCTGTTACTTG 715
Query 699 TGCAATATGCATTGATGATTATTGCGTTGGTGAAAAACTCAAGATCCTACCTTGCAAACA 758
||| ||||| |||||||||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct 716 TGCTATATGTATTGATGATTATCGCGTTGGTGAAATACTCAGGATCCTACCTTGCAAACA 775
Query 759 CAAATTTCATGTGGTGTGTATCGATTCTTGGCTCGGACATTGGAGATCCTTTTGTCCGGT 818
||||| ||||| |||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 776 CAAATATCATGCGGTGTGTATCGATTCTTGGCTCGGACGTTGTAGATCCTTTTGTCCGGT 835
Query 819 TTGTAAAC-GCATGCCAAGAACAGGAAATGGTGTTCCACCAGCGTCAGCAACAACACCTC 877
|||||||| || |||||||||||||||| ||| |||||||| |||| ||||||||||
Sbjct 836 TTGTAAACAAAAT-CCAAGAACAGGAAATGATGTACCACCAGCATCAGAAACAACACCTT 894
Query 878 TGCTTTCTCCTAGCCCAAACTCTATTACTTCACTACAATCGTTTTATGATCTACCAATTG 937
|| |||||||| | || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 895 TGATTTCTCCTGGTCCGAACTCTATTACTTCACTACAATCGTTTTATGATCTACCAATAG 954
Query 938 CTGTCAAAGTATATCTGTAA 957
||||| |||||||||||||
Sbjct 955 TTGTCAGAGTATATCTGTAA 974
Score = 222 bits (120), Expect = 4e-57
Identities = 188/220 (85%), Gaps = 8/220 (4%)
Strand=Plus/Plus
Query 1 ATGAATTGTAGGTT-GATTACAATCATGT-TTCTGTTGGTAATTTCTCAGCTGGCTTCGG 58
||||| ||| ||| |||||||||| | | || |||||||||||||||||||||||||
Sbjct 95 ATGAACGGTA-GTTGGATTACAATCCTCTCTT-TGTTGGTAATTTCTCAGCTGGCTTCTT 152
Query 59 CCAAAGTAGTGTTGATCGGGGAAAACACAATTCTCTCCTTTGAAT-ATGTCGAAGCGACT 117
| |||||| |||||||||| |||||||| ||||||| |||| || |||||||||| | |
Sbjct 153 CGAAAGTAACGTTGATCGGGAAAAACACATTTCTCTCATTTG-ATGATGTCGAAGCAAAT 211
Query 118 TTCACTCCAATTGTTAGAAGATCGGGGGAATATGGATCATTATACGCTGCAGAGCCTCTT 177
||||| ||| |||||||||||||||| ||||| |||| || ||||||||||||||||||
Sbjct 212 TTCACACCAGTTGTTAGAAGATCGGGAGAATACGGATTGTTGTACGCTGCAGAGCCTCTT 271
Query 178 GATGCGTGCTCGGATTTAAACAACC-TGGCGGAAAAAGGA 216
|||||||||||| | |||| ||| | ||||||||||||||
Sbjct 272 GATGCGTGCTCGTACTTAA-CAAACATGGCGGAAAAAGGA 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5