BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913458

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G32904.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   333    7e-91


> AT3G32904.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G30520.1); 
Has 249 Blast hits to 117 proteins in 25 species: 
Archae - 0; Bacteria - 16; Metazoa - 73; Fungi - 5; Plants 
- 112; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). 
| chr3:13451438-13452807 REVERSE LENGTH=993
Length=993

 Score =  333 bits (180),  Expect = 7e-91
 Identities = 207/220 (94%), Gaps = 2/220 (1%)
 Strand=Plus/Plus

Query  1    ATGAAAGATTCCACGGGCATCTCGGTTGATACTACTACATCTGTGATATCGGCATCTAAC  60
            |||||| | ||||||||||| |||||||||||||||||||||||||||||  ||||||||
Sbjct  154  ATGAAAAACTCCACGGGCATTTCGGTTGATACTACTACATCTGTGATATCAACATCTAAC  213

Query  61   TCATGGTGGCAAGAGCGTGAACCTCAATTCTCTGTGAACCAAAGAAGAGAACAGCT-GAG  119
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct  214  TCATGGTGGCAAGAGCGTGAACCTCAATTCTCTGTGAACCAAAGAAGAGAACAGTTGGTG  273

Query  120  CAATGATGGTCTGGATAATGATGAAGGTCATGTATACTTTGAAACATATGATGGTGATAT  179
             ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  274  -AATGATGGTTTGGACAATGATGAAGGTCATGTATACTTTGAAACATATGATGGTGATAT  332

Query  180  GCAAGACAGTCAAGTTCCTGAGACACAAGAAAATGAAGAG  219
            ||||||||||||||||| ||||||||||||||| ||||||
Sbjct  333  GCAAGACAGTCAAGTTCTTGAGACACAAGAAAACGAAGAG  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5