BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913470
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36150.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 856 0.0
> AT1G36150.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr1:13528257-13529470
FORWARD LENGTH=771
Length=771
Score = 856 bits (463), Expect = 0.0
Identities = 683/782 (87%), Gaps = 43/782 (5%)
Strand=Plus/Plus
Query 1 ATGAAGCCATCTTTTGTTCTTCTATCTATTGCT-CTATTACTATCATCATCACTATCGCA 59
||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||||| |
Sbjct 1 ATGAAGCCATCCTTTGTTCTTCTATCTATTG-TACTATTACTCTCATCATCACTATCGGA 59
Query 60 TGCATCCGACTTTGGATCGCCGTCACACCCACCGGT-GATGTCTCCAACACCGGAACCAT 118
|||| ||||||||||||| |||||||| ||||| || |||| ||||||||||| ||||||
Sbjct 60 TGCAGCCGACTTTGGATCACCGTCACAGCCACC-GTCGATGGCTCCAACACCGCAACCAT 118
Query 119 CAAACTCCATCGACTGTTCTAGCGTCATCTACAGCATGGTGGATTGTCTATCCTTCTTAA 178
||||||||| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||
Sbjct 119 CAAACTCCACCGACTGTTCCAGCGTCATATACAGCATGGTTGATTGTCTCTCCTTCTTAA 178
Query 179 CCGTCGGATCAACTGATCCAAGCCCGACCAAAACGTGTTGTGTTGGGATCAAAACCGTTC 238
||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 179 CCGTCGGATCAACGGATCCAAGCCCGACCAAAACATGTTGTGTTGGGGTCAAAACCGTTC 238
Query 239 TTGAA-TATAACCCAAAGTGTCTTTGCTCTGCGTTAGAGAGTAGTCGTGCAATGGGTTTC 297
|| || |||| ||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 239 TT-AACTATAGCCCTAAGTGTCTTTGCTCTGCGTTAGAGAGTAGTCGTGAAATGGGATTC 297
Query 298 GTACTAGATGATACCAAAGCTCTTGCCATGCCTAAAATTTGCAACGTTCCC-ATTGATCC 356
||||| |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 298 GTACTTGATGATACAAAAGCTCTTGCCATGCCTAAAATTTGCAACGT-CCCTATTGATCC 356
Query 357 TCATTGTGATGTATCTAATCCGGTTGCAACAACACCAATTTCTCCACCAGTAGAGCCACC 416
| ||||||||||||||| ||||| |||| |||||||| |||||||||| |||||| ||||
Sbjct 357 TAATTGTGATGTATCTACTCCGGCTGCATCAACACCAGTTTCTCCACCGGTAGAGTCACC 416
Query 417 TACGACTTCACCACCTTCAGCAAAGTCGCCGGCCATGACCCCTTCATcaccggcggttag 476
||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 417 TACGACTTCACCATCTTCCGCAAAGTCACCGGCCATAACCCCTTCATCACCGGCGGTTAG 476
Query 477 ccactcaccaccaccggttagccactca-ccaccaccggtgaggcactcaccaccgccaG 535
|||||||||||| || || || |||||| || || ||||| || |||||| |||||||||
Sbjct 477 CCACTCACCACCGCCCGTCAGGCACTCATCC-CCGCCGGTTAGTCACTCATCACCGCCAG 535
Query 536 TTAGGCACTCA-C-C-ACC-----GCC----A-----G--T-T-AGGCACTCATCACCGG 574
|||| |||||| | | ||| ||| | | | | || |||||||||||||
Sbjct 536 TTAGTCACTCATCACCACCAACTAGCCGCTCATCACCGGCTGTTAGCCACTCATCACCGG 595
Query 575 TGGAGGCTGCTTCATCACCGTTAAAGGCCGTCTCATCATCCACGGCAATCGCTTCATCAC 634
||| |||||||||||||||| ||||||| ||||||||||| || | ||||||||||
Sbjct 596 TGGTGGCTGCTTCATCACCGGTAAAGGCTGTCTCATCATCGAC--C----GCTTCATCAC 649
Query 635 CGATGGCAGCTTCCCCGTCACCGTCACC---A---TCAATATCTAGTACCGGGATTTTAT 688
| | |||||||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 650 CTAGGGCAGCTTCCCCGTCACCGTCACCGTCACCATCAATATCTAGTAGCGGGATTTTAT 709
Query 689 CAGTATCCAAACAATTCCTAGCTGCTGTGATGGTTTCTTCTTTTGTTTACATCTTCGCTT 748
||||||||||| |||| |||||| ||||||||||||||||||| |||||||||| ||||
Sbjct 710 TAGTATCCAAACTATTCATAGCTGTTGTGATGGTTTCTTCTTTTCTTTACATCTTAGCTT 769
Query 749 AG 750
||
Sbjct 770 AG 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5