BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913489

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36622.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   263    6e-70


> AT1G36622.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT1G36640.1); Has 12 Blast hits to 12 proteins 
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:13836131-13836954 REVERSE LENGTH=540
Length=540

 Score =  263 bits (142),  Expect = 6e-70
 Identities = 169/182 (93%), Gaps = 2/182 (1%)
 Strand=Plus/Plus

Query  1    ATGAACAAAGTCGTGATTTACGTACTAGCTTTGAGTTTTCTCTTGTTATTTGAATTACCA  60
            ||||||||||||||| |||||||||||||||||||| |||||||||| |||| |||||||
Sbjct  30   ATGAACAAAGTCGTGGTTTACGTACTAGCTTTGAGTATTCTCTTGTTCTTTGGATTACCA  89

Query  61   AACACAGCATTGGCCCGAGTACAATATGGATCTCCAAG-TTCAAGGAAGGAAATAGGAAA  119
            || ||| || ||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  90   AATACAACACTGGCCCGAGTACAATATGGATCTCC-AGTTTCAAGGAAGGAAATAGGAAA  148

Query  120  AGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCAAGATAAAGGTAGGAGGCAGTGATTC  179
            |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||
Sbjct  149  AGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCAAGATTGCTGTAGGAGGCAGTGATTC  208

Query  180  AG  181
            ||
Sbjct  209  AG  210



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10405424043


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5