BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913493

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36940.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   806    0.0  


> AT1G36940.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 
plant structures; EXPRESSED DURING: 7 growth stages. | chr1:14003866-14005502 
FORWARD LENGTH=1018
Length=1018

 Score =  806 bits (436),  Expect = 0.0
 Identities = 506/538 (94%), Gaps = 11/538 (2%)
 Strand=Plus/Plus

Query  1    ATGATGGAGACGAGACAAAACAGTGTTCAGTTCCAAAGACCAACTTTCTTACCAATGTTA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  293  ATGATGGAGACGAGACAAAACAGTGTTCAGTTCCAAAGACCAACTTTCTTACCAATGTTA  352

Query  61   TGTTCAAGACCTTCCATCAAGAACGTGACCCTCCCAGCTAAATCACATCAAGAAGACTCT  120
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct  353  TGTTCAAGACCTTCCATCAAGAACGTGACCCTCCCGGCTAAATCACATCAAGATGACTCA  412

Query  121  TACCAACAAGCCGATCCTTTGTCCCCCAAAATCAGCTGCATTGGTCAAGTCAAACGTAGC  180
            |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  413  TACCAACAAGCCGATCCTTTATCTCCCAAAATCAGCTGCATTGGTCAAGTCAAACGTAGC  472

Query  181  AACAAGATCGTCGGCTT-----CC-CCACCACCACTTCCATCTCCATCACCCCCGCCTCT  234
            |||||||||  ||||||     || |||||||||| |||| |||||||||||||| | ||
Sbjct  473  AACAAGATCACCGGCTTCCCCACCACCACCACCACCTCCACCTCCATCACCCCCGTCGCT  532

Query  235  CATCACCGTTACTTCAAGCTTAAACGTCTCTTT-TCCGGCAAGAATCTCTCTTTCTCCGC  293
            || |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  533  CAGCACCGTTACTTCAAGCTTAAACGTCT-TTTCTCCGGCAAGAATCTCTCTTTCTCCGC  591

Query  294  TCCCACTACCACCACAACCAGAACTAGTCGAGGAAGAATCAGAAAGGAGGAGTTTGGTAA  353
            ||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct  592  TCCCACTACCACCACTACCAGGACTAGTCGTGGAAGAATAAGAAAGGAGGAGTTTGGTAA  651

Query  354  CAAAAAGATTGCTGTTATCGACGTTGCTGAATTGGACCCACCTTTGCCGGTGGTTAAAAA  413
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  652  CAAAAAGATTGATGTTATCGACGTTGCTGAATTGGACCCACCTTTGCCGGTGGTTAAAAA  711

Query  414  GACACACGACGGTGGCGCCGGAGATAAAGCGGCGGAGAATCTTTGGAAGAGGAGATCTGG  473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  712  GACACACGACGGTGGCGCCGGAGATAAAGCGGCGGAGAATCTTTGGAAGAGGAGATCTGG  771

Query  474  TGGTAGTTGTCAACTCCGGAGTTTGCAGATTCAACCCAATGGAGCTCACCAGCTGAAA  531
            ||||  | ||||||| |||||||||||||||||| ||||||||| ||| |||||||||
Sbjct  772  TGGT--T-GTCAACTACGGAGTTTGCAGATTCAAACCAATGGAGTTCATCAGCTGAAA  826



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5