BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913510
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT1G37140.1 | Symbols: MCT1 | MEI2 C-terminal RRM only like 1 |... 749 0.0
> AT1G37140.1 | Symbols: MCT1 | MEI2 C-terminal RRM only like 1
| chr1:14170351-14172040 REVERSE LENGTH=702
Length=702
Score = 749 bits (405), Expect = 0.0
Identities = 557/628 (89%), Gaps = 20/628 (3%)
Strand=Plus/Plus
Query 102 TCCTTCTGTGTTCAACTTTAACAAGCCCTTTCCTTGTTCCACCAAGCCTTGCAAAGCTAT 161
|||| || |||| |||||||||||||| |||||||||| || |||||||| ||||||||
Sbjct 69 TCCTCCTTTGTTTAACTTTAACAAGCCATTTCCTTGTTACAACAAGCCTTTTAAAGCTAT 128
Query 162 TACCGGCGC-CGATGTTAAGCCTGAAAAAGAA-CC-TT--TCCGTTACGGGTTTTGTCAC 216
||||||||| | |||||||||| |||||| || || || ||||||| ||||||||||||
Sbjct 129 TACCGGCGCTC-ATGTTAAGCCGGAAAAA-AACCCTTTCGTCCGTTATGGGTTTTGTCAC 186
Query 217 CAGAGATGTCTCCCACCACGGCTTTTGAAGAAACAAGTTGTGCCTTTACCGGAAAATAAG 276
| |||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 187 CGGAGATGTCTCCCACCAAGGCTTTTGAAG----AA-----GCCTTTACCGGAAAATAAG 237
Query 277 CTCGCCGGAAAAACATCCGTCATGGTTAAGAATATACCTAACTGTCTCGGTCGAACCGAT 336
|||||||||| ||| || |||||||||||||||||||||||||||||||| |||| |||
Sbjct 238 CTCGCCGGAAGAACCTCGGTCATGGTTAAGAATATACCTAACTGTCTCGGACGAATGGAT 297
Query 337 CTCTTGATGATTTTGGACAATCATTGTCGGAAACACAA-GACAGAATCTTCCTACGACTT 395
||||||| |||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 298 CTCTTGAGGATTTTGGACAATCATTGTCGGAAACACAATGA-AAAATCTTCCTACGACTT 356
Query 396 TCTTTATCTGCCTATGGATTTTGTGAAACGAGCCAATTTGGGTTACGCCTTCGTTAACTT 455
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 357 TCTTTATCTGCCTATGGATTTTGGGAAACGAGCCAATTTGGGTTACGCCTTCGTTAACTT 416
Query 456 TACGAGCTCTGTCGCAGCTGAGAGATTCCGGAGAGAATTTGAAAACTTTTCTTGGGGCAA 515
||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 417 CACGAGCTCTCTCGCAGCGGAGAGATTCCGGAGAGAATTTGAAAACTTCTCTTGGGACAA 476
Query 516 TCTCGGGTACAGGAAGAAGATTTGCGAAATCACTGTGGCTAAGTATCAGGGGAAAGAAGA 575
| |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 477 TATCGGGTTCAGGAAGAAGATTTGCGAAATTACAGTGGCTAAGTATCAGGGGAAAGAAGA 536
Query 576 GCTGAGTCAACATTTCAAAAACTCGAGGTTCACTTGTCACACCGACGAGTATCTTCCCG- 634
||||| || |||||||| ||||| ||||| ||||| ||||||||||| ||||| ||||
Sbjct 537 GCTGACTCGACATTTCAGGAACTCAAGGTTTACTTGCCACACCGACGATTATCT-CCCGG 595
Query 635 TGGTTCTCTCGCCACCGAGCAACGGCTTCACGGCTTACACTTTCACAACACTCGGTGACC 694
||||||||||||| ||||||||||||||||||||||| ||| |||||| ||| ||| |||
Sbjct 596 TGGTTCTCTCGCCCCCGAGCAACGGCTTCACGGCTTATACTCTCACAAAACTTGGTTACC 655
Query 695 GAGTCAGCTTACGAGGCCGTGGTTCACG 722
||||| || || || ||||||||||
Sbjct 656 GAGTCGGCGCACTTGGTGGTGGTTCACG 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5