BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913518
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36160.1 | Symbols: ACC1, AT-ACC1, EMB22, GK, PAS3 | acetyl-... 455 3e-127
AT1G36180.1 | Symbols: ACC2 | acetyl-CoA carboxylase 2 | chr1:1... 449 2e-125
> AT1G36160.1 | Symbols: ACC1, AT-ACC1, EMB22, GK, PAS3 | acetyl-CoA
carboxylase 1 | chr1:13533870-13544008 FORWARD LENGTH=7058
Length=7058
Score = 455 bits (246), Expect = 3e-127
Identities = 282/300 (94%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 172 GCTGGTGAACTTATAGCCAAGCTTGATCTTAATGATCCTTCTGCTGTAAGAAAGGTCGAA 231
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct 2264 GCTGGTGAACTTATAGCCAATCTTGATCTTGATGATCCTTCTGCTGTAAGAAAGGCCGAA 2323
Query 232 CCCTTTCATGGAGGTTTCCCACGATTAGGGCTTCCAACCGCAATTTCCGGTAAAGTTCAT 291
||||| |||||| |||||||| |||||||||||||||| ||||| ||||||| |||||||
Sbjct 2324 CCCTTCCATGGAAGTTTCCCAAGATTAGGGCTTCCAACTGCAATATCCGGTAGAGTTCAT 2383
Query 292 CAGAGATGTGCTGCAACTTTAAATGCTGCTCGCATGATTCTTGCCGACTATGAGCACAAA 351
||||||||||| ||||| ||||||||||| |||||||||||||| | ||||||||| |||
Sbjct 2384 CAGAGATGTGCCGCAACATTAAATGCTGCACGCATGATTCTTGCTGGCTATGAGCATAAA 2443
Query 352 GTAGATGAGGTTGTTCAAGACTTGCTTAATTGCCTGGATAGCCCTGAACTGCCATTTCTT 411
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 2444 GTAGATGAGGTTGTTCAAGACTTACTTAATTGCCTTGATAGCCCTGAACTCCCATTTCTT 2503
Query 412 CAGTGGCAAGAGTGCTTTGCAGTTCTGGCGACACGACTACCTAAAAATCTCAGGAACATG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2504 CAGTGGCAAGAGTGCTTTGCAGTTCTGGCGACACGACTACCTAAAAATCTCAGGAACATG 2563
Score = 433 bits (234), Expect = 2e-120
Identities = 280/302 (93%), Gaps = 4/302 (1%)
Strand=Plus/Plus
Query 471 GGCACATGTCTCTTCTTGTGATGAGAAAGAGAGAGGTG-CCTTGGCAAGGCTCATTGAAC 529
||||||| | |||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 2653 GGCACATTTATCTTCTTGTGATGAGAAAGAGAGAGGTGCCCTT-GAAAGGCTCATTGAAC 2711
Query 530 CGTTGATGAGCCTTGCAAAATCTTATGAAGGTGGTAGAGAAAGTCATGCGCGTGTTATTG 589
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2712 CATTGATGAGCCTTGCAAAATCTTATGAAGGTGGTAGAGAAAGTCATGCCCGTGTTATTG 2771
Query 590 TTCATTCCCTCTTTGAAGAATATCTATCAGTAGAAGAATTATTCAATGATAATATGCTGG 649
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2772 TTCATTCTCTCTTTGAAGAATATCTATCAGTAGAAGAATTATTCAATGATAACATGCTGG 2831
Query 650 CTGATGTTATAGAACGCATGCGCCAACAATACAAGAAAGATCTGTTGAAGATTGTGGATA 709
|||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||||
Sbjct 2832 CTGATGTTATAGAACGCATGCGTCAGCTATACAAGAAAGATCTGTTGAAAATTGTGGATA 2891
Query 710 TAGTGCTCTCACACCAGGGTATTATAAATAAAAATAAACTCGTTCTACGGCATC-TAGAG 768
||||||||||||||||||| || | ||| ||||| ||||||||||| |||| || | |||
Sbjct 2892 TAGTGCTCTCACACCAGGGCATAAAAAACAAAAACAAACTCGTTCTCCGGC-TCATGGAG 2950
Query 769 CA 770
||
Sbjct 2951 CA 2952
Score = 187 bits (101), Expect = 1e-46
Identities = 140/157 (89%), Gaps = 9/157 (6%)
Strand=Plus/Plus
Query 25 CAGAATGCCCACGATCCTTCGAAGTTGATGGCTGAGACACCGTGCAAGTTGCTGAGGTAT 84
||||||| ||||||||| || ||||| |||||||||||||||||||||||| ||||||||
Sbjct 2069 CAGAATGACCACGATCCATCAAAGTTAATGGCTGAGACACCGTGCAAGTTGATGAGGTAT 2128
Query 85 TTGGTTTCAGACAACAACAATATTGACGCTGAT--G-C---T---GAAGTTGAGGTCATG 135
||| |||| ||||||| |||||||||||||||| | | | |||||||||||||||
Sbjct 2129 TTGATTTCCGACAACAGCAATATTGACGCTGATACGCCTTATGCCGAAGTTGAGGTCATG 2188
Query 136 AAGATGTGCATGCCACTTCTTTCACCTGCTTCAGGAG 172
|||||||||||||||||||||||||||||||||||||
Sbjct 2189 AAGATGTGCATGCCACTTCTTTCACCTGCTTCAGGAG 2225
> AT1G36180.1 | Symbols: ACC2 | acetyl-CoA carboxylase 2 | chr1:13545972-13558492
FORWARD LENGTH=7296
Length=7296
Score = 449 bits (243), Expect = 2e-125
Identities = 281/300 (94%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 172 GCTGGTGAACTTATAGCCAAGCTTGATCTTAATGATCCTTCTGCTGTAAGAAAGGTCGAA 231
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 2587 GCTGGTGAACTCATAGCCAAGCTTGATCTTGATGATCCTTCTGCTGTAAGAAAGGCCAAA 2646
Query 232 CCCTTTCATGGAGGTTTCCCACGATTAGGGCTTCCAACCGCAATTTCCGGTAAAGTTCAT 291
||||| | |||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 2647 CCCTTCCGTGGAAGTTTCCCACGATTAGGGCTTCCAACGGCAATCTCCGGTAAAGTTCAT 2706
Query 292 CAGAGATGTGCTGCAACTTTAAATGCTGCTCGCATGATTCTTGCCGACTATGAGCACAAA 351
||||||||||||||||||||||||||||| || ||||||||||| | |||||| || |||
Sbjct 2707 CAGAGATGTGCTGCAACTTTAAATGCTGCACGTATGATTCTTGCTGGCTATGATCATAAA 2766
Query 352 GTAGATGAGGTTGTTCAAGACTTGCTTAATTGCCTGGATAGCCCTGAACTGCCATTTCTT 411
|||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2767 GTAGATGAGGTTCTTCAAGACTTGCTTAATTGCCTTGATAGCCCTGAACTCCCATTTCTT 2826
Query 412 CAGTGGCAAGAGTGCTTTGCAGTTCTGGCGACACGACTACCTAAAAATCTCAGGAACATG 471
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2827 CAGTGGCAAGAGTGCTTTGCAGTTCTGGCGACACGACTACCTAAAGATCTCAGGAACATG 2886
Score = 361 bits (195), Expect = 7e-99
Identities = 257/287 (90%), Gaps = 4/287 (1%)
Strand=Plus/Plus
Query 471 GGCACATGTCTCTTCTTGTGATGAGAAAGAGAGAGG-TGCCTTGGCAAGGCTCATTGAAC 529
||| ||| | |||||||||||||||||||||||||| | |||| | ||||||||||||||
Sbjct 2976 GGCTCATCTATCTTCTTGTGATGAGAAAGAGAGAGGTTCCCTT-GAAAGGCTCATTGAAC 3034
Query 530 CGTTGATGAGCCTTGCAAAATCTTATGAAGGTGGTAGAGAAAGTCATGCGCGTGTTATTG 589
||||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 3035 CGTTGATGAGCCTTGTGAAGTCTTATGAAGGTGGTAGAGAAAGTCATGCCCGTCTTATTG 3094
Query 590 TTCATTCCCTCTTTGAAGAATATCTATCAGTAGAAGAATTATTCAATGATAATATGCTGG 649
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 3095 TTCATTCCCTCTTTGAAGAATACCTATCAGTTGAAGAATTATTCAATGATAACATGCTGG 3154
Query 650 CTGATGTTATAGAACGCATGCGCCAACAATACAAGAAAGATCTG-TTGAAGATTGTGGAT 708
|||||||||||||||||||||| || ||||||||||| |||| | || |||||||| |||
Sbjct 3155 CTGATGTTATAGAACGCATGCGTCAGCAATACAAGAAGGATC-GATTAAAGATTGTCGAT 3213
Query 709 ATAGTGCTCTCACACCAGGGTATTATAAATAAAAATAAACTCGTTCT 755
|| ||||| ||||||||||| || ||| | ||||| ||||| |||||
Sbjct 3214 ATCGTGCTTTCACACCAGGGCATAATACACAAAAACAAACTGGTTCT 3260
Score = 163 bits (88), Expect = 2e-39
Identities = 141/165 (85%), Gaps = 10/165 (6%)
Strand=Plus/Plus
Query 18 GCTTA-TTCAGAATGCCCACGATCCTTCGAAGTTGATGGCTGAGACACCGTGCAAGTTGC 76
||||| | ||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2384 GCTTACTACAGAATGATCATGATCCTTCGAAGTTGATGGCTGAGACACCATGCAAGTTGC 2443
Query 77 TGAGGTATTTGGTTTCAGACAACAACA--AT--AT--TGA--CGCTG-ATGCTGAAGTTG 127
| ||||| ||||||||||||||| || || || ||| ||| | |||| |||||||
Sbjct 2444 TAAGGTACCTGGTTTCAGACAACAGCAGTATTGATACTGATACGCCGTATGCAGAAGTTG 2503
Query 128 AGGTCATGAAGATGTGCATGCCACTTCTTTCACCTGCTTCAGGAG 172
| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 2504 AAGTCATGAAGATGTGCATGCCACTTATTTCACCTGCGTCAGGAG 2548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5