BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913522
Length=3786
Score E
Sequences producing significant alignments: (Bits) Value
AT1G42470.1 | Symbols: | Patched family protein | chr1:1592698... 6082 0.0
AT4G38350.2 | Symbols: | Patched family protein | chr4:1795817... 625 1e-177
> AT1G42470.1 | Symbols: | Patched family protein | chr1:15926987-15935208
FORWARD LENGTH=3899
Length=3899
Score = 6082 bits (3293), Expect = 0.0
Identities = 3610/3766 (96%), Gaps = 9/3766 (0%)
Strand=Plus/Plus
Query 1 ATGCAGATTCTGTTTGTTGGTTATGGAGTGGAAGCAAAACAATCAGCCGGATATTGTGCT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGCAGATTCTGTTTGTTGGTTATGGAGTGGAAGCAAAACAATCAGCAGGATATTGTGCT 60
Query 61 ATGTATGATATCTGTGGAGCAAGAAGTGATGGGAAAGTACTAAATTGCCCTTTCAACATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGTATGATATCTGTGGAGCAAGAAGTGATGGGAAAGTACTAAATTGCCCTTTCAACATT 120
Query 121 CCTGCTGTGAAGCCTGATGATTTGTTATCTTCAAAGATTCAAAGCTTATGTCCAACAATC 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTTCTGTGAAGCCTGATGATTTGTTATCTTCAAAGATTCAAAGCTTATGTCCAACAATC 180
Query 181 ACTGGCAATGTTTGTTGCACAGAGACTCAATTTGATACATTACGTTCACAAGTTCAACAG 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ACTGGCAATGTTTGTTGCACAGAGACTCAATTTGATACATTACGTTCGCAAGTTCAACAG 240
Query 241 GCTATTCCTTTCATTGTAGGTTGTCCAGCATGTTTGAGGAATTTTCTGAATCTTTTCTGT 300
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 241 GCTATTCCTTTTATTGTTGGTTGTCCAGCATGTTTGAGGAACTTTCTGAATCTTTTTTGT 300
Query 301 GAACTTACTTGTTCTCCGGATCAGAGTTTATTCATCAATGTAACTTCTACTACAAAGGTC 360
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 301 GAACTTACTTGTTCTCCGGATCAGAGTTTGTTTATCAATGTAACTTCTACTACAAAGGTC 360
Query 361 AAGAATAATTCGACTGTAGATGGGATTCAGTACTATATAACTGATGATTTTGGAGCGGGG 420
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 361 AAGAATAATTCTACTGTAGATGGAATTCAGTACTATATAACTGATGATTTTGGAGCTGGG 420
Query 421 ATGTATGAATCTTGCAAAAATGTGAAATTCGGTAGCTCTAATAGCCGAGCTTTAGACTTT 480
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 421 ATGTATGAATCTTGCAAAAATGTAAAATTTGGTAGCTCGAATAGCCGAGCTTTAGACTTT 480
Query 481 CTCGGAGCCGGTGCAAAGGATTTTAAGGAGTGGTTTGCATTTATTGGTCAGAAAGCGGGT 540
|||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct 481 CTCGGAGCCGGTGCAAAGAACTTTAAGGAGTGGTTTACATTTATTGGTCAGAAAGCGGGT 540
Query 541 GTCAATGTGCCAGGCTCACCGTATGGGATTGCGTTTTTGCCAACACCACCAGTGTCATCT 600
|||||| |||||||||||||||||||||| || |||||||||||||| || ||||| |||
Sbjct 541 GTCAATTTGCCAGGCTCACCGTATGGGATCGCTTTTTTGCCAACACCGCCTGTGTCGTCT 600
Query 601 GGAATGAGGCCTATGAATGTGTCTACTTATTCATGCGGTGATGAGTCTCTTGGCTGTTCT 660
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 601 GGAATGAGGCCTATGAATGTGTCTATTTATTCATGTGGTGATGAGTCTCTTGGCTGTTCT 660
Query 661 TGTGGTGATTGTCCTTCTGCAGCTACTTGCTCCAGTAAAGCAGAAGTTCCTACTCAGAAA 720
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 661 TGTGGTGATTGTCCTTCTGCAGCTACTTGCTCTAGTAAAGCAGAAGTGCCTACTCAGAAA 720
Query 721 AAGCACTCTTGTTCTATCAAAATTGGATCACTTGAGGCGAAATGTGTTGATTTCATACTA 780
|| || ||||| |||||||| |||||||||||||||| ||||||||||||||||||| ||
Sbjct 721 AAACATTCTTGCTCTATCAAGATTGGATCACTTGAGGTGAAATGTGTTGATTTCATATTA 780
Query 781 GCCATTGTGTATATTGTATTGGTTTCACTGTTTCTCGGAGGCGGTTTACTTCACCGAGTA 840
|||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||
Sbjct 781 GCCATTTTGTATATTGTATTGGTTTCATTGTTTCTTGGAGGAGGTTTACTTCACCCAGTA 840
Query 841 AGGGGTAAGAAAAAGACCTCACAGATGAGACCATCGTCAGAAGCTGGTGGAGAGC-AAAG 899
||||||||||||||||||||||||||| || ||| |||||||||| ||||||| | |||
Sbjct 841 AGGGGTAAGAAAAAGACCTCACAGATGGGAACATTGTCAGAAGCTAGTGGAGAACGAAA- 899
Query 900 TTCTGCTAATTTGCAAAAACCAGACACTA-TCCATGCACAGATGTTACAAAATACTCCAC 958
||||| |||| ||||||||||||||||| || || | ||||||||||||||||||||||
Sbjct 900 TTCTGTTAATCAGCAAAAACCAGACACTATTCAAT-CGCAGATGTTACAAAATACTCCAC 958
Query 959 AGAGAAACTGGGGTCAGCTATCGACAGTACAAGGACACTTGGCCAATTTTTACAGGAAGT 1018
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 959 AGAGAAACTGGGGTCAGCTATCGACAGTACAAGGACACTTGGCCAACTTTTACGGGAAGT 1018
Query 1019 ATGGGATTTGGGTAGCAAGACACCCAACTCTTGTTTTGTGTTTGTCAGTCTCTGTAGTTC 1078
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 ATGGGATTTGGGTAGCAAGACACCCCACTCTTGTTTTGTGTTTGTCAGTCTCTGTAGTTC 1078
Query 1079 TTCTCCTTTGTGTGGGTCTGATCCGATTCAAAGTGGAGACACGGCCTGATAAGCTATGGG 1138
||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1079 TTCTCCTTTGTGTGGGTCTGATCCGGTTCAAAGTTGAGACACGGCCTGATAAGCTGTGGG 1138
Query 1139 TAGGATCAGGGAGCAGAGCTGCTGAAGAGAAACAATTCTTTGACACCCATCTTGCTCCTT 1198
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1139 TAGGATCAGGTAGCAGAGCTGCTGAAGAGAAACAATTCTTTGACACTCATCTTGCTCCTT 1198
Query 1199 TCTACAGAATTGAACAGCTAATAATAGCAACAGTTCAAAAATCTTCTCACGAAAAGGCGC 1258
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1199 TCTACAGAATTGAACAGCTAATAATAGCAACAGTTCAAACATCTTCTCACGAAAAGGCGC 1258
Query 1259 CAGAGATTTTGACAGATGACAATATTAAGTTACTTTTTGACATACAAAAGAAGGTCGATG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CAGAGATTTTGACAGATGACAATATTAAGTTACTTTTTGACATACAAAAGAAGGTCGATG 1318
Query 1319 GACTTCGGGCAAATCACTCAGGTTCAATGGTTTCTCTGACAGATATTTGCATGAAACCCC 1378
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1319 GACTTCGGGCAAATCACTCAGGTTCAATGGTTTCTCTGACAGATATCTGCATGAAACCCC 1378
Query 1379 TGGGAGAGGATTGTGCCACACAGAGTGTTCTGCAG---TATTTCAAGATGAAACCAGAAA 1435
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1379 TGGGAGAGGATTGTGCCACACAGAGTGTTCTGCAGCAGTATTTCAAAATGAAACCAGAAA 1438
Query 1436 ATTATGATGACTTTGGAGGCGTCGATCATGTTAAATATTGCTTTGAGCATTTCACCTCGA 1495
||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1439 ATTATGACGACTATGGAGGCGTTGATCATGTTAAATATTGTTTTGAGCATTTCACCTCGA 1498
Query 1496 CAGATTCATGTTTGAGTGCATTTAAGGGTCCACTTGATCCAACTACTGCACTGGGAGGTT 1555
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CAGAATCATGTTTGAGTGCATTTAAGGGTCCACTTGATCCAACTACTGCACTGGGAGGTT 1558
Query 1556 TCTCAGGGAACAGTTTTAGTGAGGCTTCTGCTTTTCTTGTGACTTATCCTGTGGACAATG 1615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TCTCAGGGAACAGTTTTAGTGAGGCTTCTGCTTTTCTTGTGACTTATCCTGTGGACAATT 1618
Query 1616 CTGTTGACAATAAAGGTAACAAAACTGAGAAAGCAGTAGCATGGGAGAAAGCCTTTATCC 1675
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TTGTTGACAATAAAGGTAACAAAACTGAGAAAGCAGTAGCATGGGAGAAAGCCTTTATCC 1678
Query 1676 AACTGGCCAAGGATGAGTTGTTGCCAATGGTTAAAGCAAAAAATTTAACTCTTTCTTTCT 1735
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1679 AACTGGCCAAGGATGAGTTGTTGCCAATGGTTCAAGCAAAAAATTTAACTCTTTCTTTCT 1738
Query 1736 CTTCGGAAAGTTCTATTGAAGAAGAATTGAAAAGAGAAAGCACAGCAGATGTCATAACTA 1795
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1739 CGTCGGAAAGTTCTATTGAAGAAGAACTGAAAAGAGAAAGCACAGCAGATGTCATAACTA 1798
Query 1796 TAGCCATAAGTTATCTTGTCATGTTTGCCTATATATCACTCACACTTGGAGATTCACCTC 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TAGCCATAAGTTATCTTGTCATGTTTGCCTATATATCACTCACACTTGGAGATTCACCTC 1858
Query 1856 GCTTAAATTCCTTTTACATAACATCCAAGGTTCTGCTTGGTCTATCTGGTGTTCTACTTG 1915
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 GCTTAAAGTCCTTTTACATTACATCCAAGGTTCTGCTTGGTCTATCTGGTGTTCTACTTG 1918
Query 1916 TCATGCTTTCCGTCCTCGGCTCTGTAGGATTTTTCAGTGCCGTTGGGATGAAATCGACTC 1975
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 TCATGCTTTCTGTCCTTGGCTCTGTAGGATTTTTCAGTGCCGTTGGGATGAAATCGACTC 1978
Query 1976 TTATAATAATGGAAGTTATACCTTTTCTTGTTTTGGCTGTCGGTGTTGATAATATGTGCA 2035
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 TAATCATAATGGAAGTTATACCTTTTCTTGTTTTGGCTGTCGGTGTTGATAATATGTGCA 2038
Query 2036 TACTGGTTCATGCTGTGAAGAGGCAAGAGCAAGAGCTGCCTTTGGAAAGACGAATAAGCA 2095
| |||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 2039 TCCTGGTTCATGCTGTCAAGAGGCAAGAGCAAGAGCTGCCTTTGGAAAGAAGAATTAGCA 2098
Query 2096 ATGCCCTTATGGAAGTTGGACCATCGATTACTCTTGCAAGTTTAGCCGAGATTTTAGCTT 2155
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2099 ATGCCCTTATGGAAGTTGGACCATCGATTACTCTAGCAAGTTTAGCCGAGATTTTAGCTT 2158
Query 2156 TTGCTGTTGGTGCTTTTATTAAAATGCCAGCTGTTCGAGTGTTCTCCATGTTTGCTGCAT 2215
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2159 TCGCTGTTGGTGCTTTCATTAAAATGCCAGCTGTTCGAGTATTCTCCATGTTTGCTGCAT 2218
Query 2216 TGGCTGTCCTTTTGGACTTTCTTCTCCAGATTACTGCGTTTGTAGCTTTGATAGTTTTTG 2275
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2219 TGGCTGTCCTTTTGGACTTTCTTCTCCAGATTACCGCGTTTGTAGCTTTGATAGTTTTTG 2278
Query 2276 ACTTCCAACGGACAGAGGATAAGCGGGTTGATTGCTTCCCATGTATTAAGACATCGAAAT 2335
|||||| |||||| ||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 2279 ACTTCCGACGGACGGAGGATAAGCGAGTTGATTGCTTCCCGTGTATTAAGACATCAAAAT 2338
Query 2336 CATCTAATAGCGCTGACAAAGGGGTTGGTCAGAGAAAAGCTGGCCTTTTGACTCGATATA 2395
|||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2339 CATCTATTAGTGCTGAAAAAGGGGTTGGTCAAAGAAAAGCTGGCCTTTTGACTCGATATA 2398
Query 2396 TGAAGGAAGTCCATGCACCCGTTCTTAGCCATTGGGCAGTCAAAATATTGGTTATTGCCT 2455
||||||||||||||||||| ||||||||||||||| |||||||||| |||| |||||||
Sbjct 2399 TGAAGGAAGTCCATGCACCTGTTCTTAGCCATTGGATAGTCAAAATAGTGGTCATTGCCT 2458
Query 2456 TCTTCTTTGGCTTAGCTATGGCTGGAATTGCAATGTCCACTCGGATTGAGCCTGGCTTGG 2515
|||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||| ||||
Sbjct 2459 TCTTCTTTGGCTTAGCAATGGCTGGAATTGCATTGTCGACTCGTATTGAGCCTGGTTTGG 2518
Query 2516 AGCAACAGATTGTTCTTCCTCAAGACTCATATCTTCAGGGTTACTTCAACAATATTTCAA 2575
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2519 AGCAACAGATTGTTCTTCCTCAAGACTCATATCTTCAGGGTTACTTCAACAATATTTCTA 2578
Query 2576 CATATCTTCGTATTGGTCCACCTTTATACTTTGTTCTGAAGAATTATAACTACAGCTCAG 2635
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2579 CATATCTTCGAATCGGTCCACCTTTATACTTTGTTCTGAAGAATTATAACTACAGCTCAG 2638
Query 2636 AATCAAGACAGACTAATCAACTTTGTTCCATTAACAAGTGTGATTCTAACTCTCTTTTAA 2695
|||||||||| || ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2639 AATCAAGACATACAAATCAACTTTGTTCCATTAACAAGTGTAATCCTAACTCTCTTTTAA 2698
Query 2696 ATGAGATTGCAAGGGCTTCTTTGACTCCAGAACTAAGCTACATAGCTAAGCCAGCTGCTT 2755
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2699 ATGAGATTGCAAGGGCTTCTTTGACTCCGGAACTAAGCTACATAGCTAAGCCAGCTGCTT 2758
Query 2756 CATGGCTTGATGACTTTCTCGTGTGGTTATCTCCCGAGGCGTTTGGCTGTTGCCGAAAGT 2815
| ||||| ||||||||||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct 2759 CGTGGCTCGATGACTTTCTTGTGTGGTTATCTCCCGAGGCGTTTGGATGTTGCAGAAAGT 2818
Query 2816 TTACAAATGGTACCTTTTGCCCCCCTGATGACCAGCCTCCTTGTTGCTCTCCTGATCAAG 2875
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 2819 TTACAAATGGTACCTTTTGCCCCCCTGATGACCAGCCTCCTTGTTGCCCTCCTGGTCAAA 2878
Query 2876 -GCAGCTGTGGCCTAAGTGAAGTATGCAAAGATTGTACCACGTGCTTCCGTCATGCAGAT 2934
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2879 CG-AGCTGTGGCCTAAGTGAAGTATGCAAAGATTGTACCACGTGCTTCCGGCATGCAGAT 2937
Query 2935 TTAAGTAGTGACCGCCCATCCACAACCCAATTCAAAGAGAAACTTCCTTGGTTCCTCAAC 2994
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2938 TTAAGTAGTGACCGCCCTTCCACAACACAATTCAAAGAGAAACTTCCTTGGTTCCTCAAC 2997
Query 2995 GCGCTTCCTTCCGCTGATTGTGCTAAAGGTGGACATGGTGCTTATTCTAGTAGTGTTGAT 3054
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2998 GCGCTCCCTTCTGCTGATTGTGCTAAAGGTGGACATGGTGCTTATTCTAGTAGTGTTGAT 3057
Query 3055 TTACAAGGCTATGAAAATGGTATAATTCAAGCTTCATCGTTCCGCACTTATCACACACCC 3114
|| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 3058 TTGCAAGGCTATGCAAATGGTATCATTCAAGCTTCATCGTTCCGTACTTATCACACACCC 3117
Query 3115 CTTAACAAGCAGGCTGACTTTGTTAATTCAATGAGAGCTGCTCAAGAATTTAGTGCAAAA 3174
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3118 CTTAACAAGCAGGTTGACTTTGTTAATTCAATGAGAGCTGCTCAAGAATTTAGTGCAAAA 3177
Query 3175 GTTTCCCGTTCCTTAAAGATGGAGATATATCCATATTCAGTGTTTTATATGTTCTTTGAG 3234
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3178 GTTTCCCGTTCCTTAAAGATGGAGATATATCCTTATTCAGTGTTTTATATGTTCTTTGAG 3237
Query 3235 CAATATCTTGACATATGGAAAACTGCACTAATCAACCTCTCCATAGCCATTGCTGCCGTG 3294
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 3238 CAATATCTTGACATATGGAAAACTGCATTAATCAACCTCTCCATAGCCATCGCTGCCGTG 3297
Query 3295 TTTGTCGTGTGTTTAATCATCACATGCAGCTTTTGGAGCTCCGCAATTATTTTGCTGGTG 3354
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3298 TTTGTCGTGTGTTTAATCATCACATGCAGCTTTTGGAGCTCGGCAATTATTTTGCTGGTG 3357
Query 3355 ATCGCAATGATCATTATTGATCTCTTGGGAGTTATGGCAGTCTTTCATATCCAGCTAAAC 3414
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3358 ATCGCGATGATCATTATTGATCTCCTGGGAGTTATGGCAGTCTTTCATATCCAGCTAAAC 3417
Query 3415 GCACTATCGGTTGTAAATCTAATCATGTCCGTGGGCATAGCGGTTGAGTTTTGTGTGCAC 3474
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 3418 GCACTATCGGTTGTAAATCTAATCATGTCCGTGGGCATAGCGGTTGAGTTTTGCGTACAC 3477
Query 3475 ATAACACACGCTTTCTCGCACTGGGGACAGAAACCATCGGATGAAAGAGGCGTTGGGTGG 3534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3478 ATAACACACGCTTTCTCGCACTGGGGACAGAAACCATCGGATGAAAGAGGCGTTGGGTGG 3537
Query 3535 GATGGGAGCTTCAGTTTTCAGTGGAATTACATTGACGAAGCTAGTTGGGGTAATTGTGCT 3594
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 3538 GATGGGAGCTTCAGTTTTCAGTGGAATTACATTGACGAAACTAGTTGGGGTGATTGTGCT 3597
Query 3595 CAGTTTCTCAAGATCAGAAGTCTTTGTGGTCTACTACTTCAAGATGTATCTGGCACTAGT 3654
| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 3598 CGGTTTCTCAAGATCAGAAGTCTTTGTGGTGTACTACTTCAAGATGTATTTGGCACTAGT 3657
Query 3655 CCTCCTCGGTTTCTTGCACGGCCTTGTATTTTTACCGGTGTTCTTGAGCATGTTTGGTCC 3714
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3658 CCTTCTCGGTTTCTTACACGGCCTTGTATTTTTACCGGTGTTCTTGAGCATGTTTGGTCC 3717
Query 3715 TTCTCCAAGACATGTAGAAGGGGAAAGGCAAGATCATCGACCTTCG 3760
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3718 AGCTCCAAGACATGTAGAAGGGGAAAGGCAAGATCATCGACCTTCG 3763
> AT4G38350.2 | Symbols: | Patched family protein | chr4:17958177-17966962
REVERSE LENGTH=4157
Length=4157
Score = 625 bits (338), Expect = 1e-177
Identities = 1538/2106 (73%), Gaps = 127/2106 (6%)
Strand=Plus/Plus
Query 1648 GCAGTAGCATGGGAGAAAGCCTTTATCCAACTGGCCAAGGATGAGTTGTTGCCAATGGTT 1707
|||||||||||||| ||| | || || ||| | || ||||| ||| || | || |||||
Sbjct 1878 GCAGTAGCATGGGAAAAATCGTTCATTCAATTAGCAAAGGAGGAGCTGCTACCTATGGTG 1937
Query 1708 AAAGCAAAAAATTTAACTCTTTC-TTTCTCTTCGGAAAGTTCTATTGAAGAAGAATTGAA 1766
| | || ||||| | ||| || ||| || || ||||| || || || ||||| ||||
Sbjct 1938 CGATCCAAGAATTTGAGTCTGTCATTT-TCATCCGAAAGCTCAATAGAGGAAGAGCTGAA 1996
Query 1767 AAGAGAAAGCACAGCAGATGTCATAACTATAGCCATAAGTTATCTT-GTCATGTTTGCCT 1825
||||||||| || || ||||| ||||| ||||| ||| ||| || || ||||||| |
Sbjct 1997 AAGAGAAAGTACTGCTGATGTTATAACAATAGCTGCAAGCTAT-TTGGTTATGTTTGTTT 2055
Query 1826 ATATATCACTCACACTTGGAGATTCACCTC-GCTTAAATTCCTTTTACATAACATCCAAG 1884
| || || |||||||||||||| | || | | || || |||||||||| |||| |||
Sbjct 2056 ACATTTCGGTCACACTTGGAGATGCTCCGCAG-TTCTATACCTTTTACATTTCATCAAAG 2114
Query 1885 GTTCTGCTTGGTCTATCTGGTGTTCTACTTGTCATGCTTTCCGTCCTCGGCTCTGTAGGA 1944
||| |||| ||||| || || ||| | |||||| ||||||| || || || ||||| |||
Sbjct 2115 GTTTTGCTCGGTCTTTCGGGGGTTGTGCTTGTCTTGCTTTCTGTACTTGGATCTGTTGGA 2174
Query 1945 TTTTTCAGTGCCGTTGGGA-TGAAATCGACTCTT-ATAATAATGGAAGTTATACCTTTTC 2002
||||||||||| || ||| | ||||| || || || ||||||||||| || ||||| |
Sbjct 2175 GTTTTCAGTGCCCTT-GGAGTTAAATCCAC-ATTGATCATAATGGAAGTCATTCCTTTCC 2232
Query 2003 TTGTTTTGGCTGTCGGTGTTGATAATATGTGCATACTGGTTCATGCTGTGAAGAGGCAAG 2062
| || ||||||| || || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 2233 TAGTCCTGGCTGTGGGAGTAGATAATATGTGCATACTGGTTCATGCTGTAAAGAGACAAC 2292
Query 2063 AGCAAGAGCTGCCTTTGGAA-AGACGAATAAGCAATGCCCTTATGGAAGTTGGACCATCG 2121
| ||| | |||| || | |||||| ||| ||| ||| | ||||| || |||||
Sbjct 2293 CTCGTGAGGTTTCTTTAGAGCA-ACGAATTAGCTCTGCACTTGTTGAAGTAGGTCCATCC 2351
Query 2122 ATTACTCTTG-CAAGTTTAGCCGAGATTTTAGCTTTTGCTGTTGGTGCTTTTATTAAAAT 2180
|| || ||| |||||||| ||||| | || |||||||||||||| |||||| || |||
Sbjct 2352 ATAACA-TTGGCAAGTTTATCCGAGGTCTTGGCTTTTGCTGTTGGAGCTTTTGTTCCAAT 2410
Query 2181 GCCAGC-TGTTCG-AGTGTTCTCCATGTTTGCTGCATTGGCTGTCCTTTTGGACTTTCTT 2238
|||||| ||| || | | |||||||||||||| ||||||||| | | ||||||| |||
Sbjct 2411 GCCAGCATGT-CGTA-TCTTCTCCATGTTTGCAGCATTGGCTATTATGCTGGACTT-CTT 2467
Query 2239 -CTCCAGATTACTGCGTTTGTAGCTTTGATAGTTTTTGACTTCCAACGGA-CAGAGGATA 2296
|| || || || || ||||| || | ||||||||||||| | || | | | | |||||
Sbjct 2468 TCTGCAAATCACCGCTTTTGTTGCGCTAATAGTTTTTGACTGCAAAAG-ATCTGCGGATA 2526
Query 2297 AGCGGGTTGATTGCTTCCCATGTATTAAGACATCGAA-ATCATCTA-ATAGCGCTGACAA 2354
| || ||||||| ||||| || || || | || ||||||| | | ||| |
Sbjct 2527 ATAGGATTGATTGTTTCCCTTGCATAAA-AGTTCCTTCATCATCTCGAGAAT-CTGTTGA 2584
Query 2355 AGGGGTTGGTCAGAGAAAAGCTGGCCTT-TTGACTCGATATATGAAGGAAGTCCATGCAC 2413
||| | || || ||| |||| || |||| |||| |||||||| || |||||||
Sbjct 2585 AGG--T-GGA-AGGGAAC--CTGGGTTTCTTGAGA-GATACATGAAGGAGGTTCATGCAC 2637
Query 2414 CCGTTCTTAGCCATTGGGCAGTCAAAATATTGGTTATTG-C-CT-TCTTCTTTGGCTTA- 2469
|||||||| | | ||||| || |||| || |||| ||| | || | ||||| | |||
Sbjct 2638 CCGTTCTTGGACTTTGGGGTGT-AAAA-AT-GGTTGTTGTCGCTGTATTCTTCG-CTTTT 2693
Query 2470 GCTA-TGGCTGGAATTGCAAT--GTCCACTCGGATTGAGCCTGGCTTGGAGCA-ACAGAT 2525
|| | |||| | ||||| || | ||| || |||| ||||||||||||| | | ||
Sbjct 2694 GC-ACTGGCAAGCATTGCCATCAGCCCAA--GGCTTGAAACTGGCTTGGAGCAGAAA-AT 2749
Query 2526 TGTTCTTCCTCAAGACTCATATCTTCAGGGTTACTTCAACAATATTTCA-ACATATCTTC 2584
||||||||||| |||||| || ||||| | || || ||| | | ||| | || || |
Sbjct 2750 TGTTCTTCCTCGAGACTCCTACCTTCAAGACTATTTTGACAGTCTCTCAGAG-TACCT-C 2807
Query 2585 -GTATTGGT-CCACCTTTATACTTTGTTCTGAAGAATTATAACTACAGCTCAGAATCAAG 2642
| | ||| || ||||| || |||||| | |||||||| || || ||||| ||||||||
Sbjct 2808 AG-AGTGGGGCCGCCTTTGTATTTTGTTGTCAAGAATTACAATTATAGCTCGGAATCAAG 2866
Query 2643 ACAGACTAATCAACTT-TGTTCCATTAAC-AAGTGTGATTCTAACTCTCTTTTAAATGAG 2700
|| || ||||| || || || || | | || || |||| || || ||||||||||||
Sbjct 2867 GCATACAAATCAG-TTGTGCTCTATCAGCCAA-TGCAATTCGAATTCCCTTTTAAATGAG 2924
Query 2701 AT-TGCAAGGGCTTCTTTGACTCCAGA-ACTAAGCTACATAGCTAAGCCAGCTGCTTCAT 2758
|| | |||| || || | || |||| || ||| ||||| || || ||||||||||| |
Sbjct 2925 ATAT-CAAGAGCGTCACAGGCTTCAGATAC-AAGTTACATTGCCAAACCAGCTGCTTCTT 2982
Query 2759 GGCTTGATGACTTTCTCGTGTGGTTATCTCCCGAGGCGTTTGGCTGTTGCCGAAAGTTTA 2818
|||| ||||||||||| || ||| |||| || ||||| ||||||||||| || ||||| |
Sbjct 2983 GGCTCGATGACTTTCTTGTATGGCTATCACCAGAGGCTTTTGGCTGTTGTCGGAAGTTCA 3042
Query 2819 CAAATGGTACCTT-TTGCCCCCCTGATGACCAGCCTCCTTGTTGCTCTCCTGATCAAGGC 2877
| ||||| | || ||| || || ||||||||||| ||||| ||| | |||| |||
Sbjct 3043 CTAATGGCAG-TTATTGTCCTCCAGATGACCAGCCACCTTGCTGCACGGCTGAGGAAGAT 3101
Query 2878 AGCTGTGGCCTA-A-GTGAAGTATGCAAAGATTGTACCACGTGCTTCCGTCA-TGCAGAT 2934
| || | || | | || | || ||||| |||||||| ||||| || || | |||||
Sbjct 3102 ATATGCAGTTTAGATGGGA--TCTGTAAAGACTGTACCACATGCTTTCGACACT-CAGAT 3158
Query 2935 TTAAGT--AGTGACCGCCCATCCACAACCCAATTCAAAGAGAAACTTCCTTGGTTCCTCA 2992
|| || || || || ||||| ||| | ||||||| |||||||| || ||||| || |
Sbjct 3159 TTG-GTTCAG-GATCGTCCATCTACAGCTCAATTCAGGGAGAAACTACCCTGGTTTCTAA 3216
Query 2993 ACGCGCTT-CCTTCCGCTGATTGTGCTAAAGG-TGGACATGGTGCTTATTCTAGTAGTGT 3050
| || || || || ||||| ||||| ||||| ||| || || |||||| | | ||| ||
Sbjct 3217 ATGCT-TTGCCATCGGCTGACTGTGC-AAAGGGTGGTCACGGGGCTTATACGAATAGCGT 3274
Query 3051 TGATTTACAAGGCTATGAAAATGGTATAATTCAAGCTTCATCGTTCCGCACTTATCACAC 3110
|||||| |||| ||||| | |||| | || || || || |||||| || || |||||
Sbjct 3275 GGATTTAAAAGGGTATGAGAGTGGTGTTATACAGGCATCGGAGTTCCGTACATACCACAC 3334
Query 3111 ACCCCTTAACA-AGCA-GGCTGACTTTGTTAATTCAATGAGAGCTGCTCAAGAATTTAGT 3168
|| ||||||| | || || ||||| ||||||| || || ||||||||| || || |||
Sbjct 3335 TCCACTTAACACA-CAAGG-TGACTATGTTAATGCACTGCGAGCTGCTCGGGAGTTCAGT 3392
Query 3169 GCAA-AAGTTTCCCGTTCCTTAAAGATGGAGATATATCCATATTCAGTGTTTTATATGTT 3227
||| || | ||| |||||| ||||| || || | ||||||||| || || || || ||
Sbjct 3393 TCAAGAA-TATCCAATTCCTTGAAGATTGACATCTTTCCATATTCTGTCTTCTACATTTT 3451
Query 3228 CTTTGAGCAATATCTTGACATAT--GGAAAACT-GCACTAATCAA-CCTCTCC-ATAGCC 3282
||||||||||||||| || |||| ||| | | || | | ||| ||| | | |||||
Sbjct 3452 CTTTGAGCAATATCT-GA-ATATCTGGACAG-TAGCTTTGA-CAAACCT-TGCTATAGCA 3506
Query 3283 ATTGCTGCCGTGTTTGTCGTGTGTTTAATCATCACATGCAGCTTT-TGGAGCTCCGCAAT 3341
|| | ||| | ||| | || || | | ||||| | ||| | ||||| || || ||
Sbjct 3507 ATCGGTGCTATATTTATTGTTTGCTGGTTAATCACTTCCAG-TGCCTGGAGTTCAGCCAT 3565
Query 3342 TATTTTGCTGGTGATCGCAATGATCATTATTG-ATCTCTTGGG-AGTTATGGC-AGTCTT 3398
||| | || ||| | | ||||| | | || ||||| |||| | | |||| | |||
Sbjct 3566 CATTGTCCTTGTGTTAGTGATGAT-ACTCGTGGATCTCATGGGTA-TGATGGTGATTCTA 3623
Query 3399 T-CATATCCAGCTAAACGCACTATCGGTTGTAAATCTAATCATGTCCGT-GGGCATAGCG 3456
||| ||| || || ||| | || ||||| ||| | || ||||| | ||| || ||
Sbjct 3624 GGCAT--CCAACTCAATGCAGTTTCTGTTGTGAATTTGATAATGTCAATCGGG-ATTGCT 3680
Query 3457 GTTGAGTTTTGTGTGCACATAACACACGCTTTC-TC--GC--ACTGGGGACAGA-AACCA 3510
|| || || || ||||||||| |||| |||||| | | | |||||||||| ||| |
Sbjct 3681 GTAGAATTCTGCGTGCACATATCACATGCTTTCCTGATGAGTAGTGGGGACAGAGAAC-A 3739
Query 3511 TCG-GATGAAAGAGGCGTTGGGTGGGATGGGAGCTTCAGTTTTCAGTGGAATTACATTGA 3569
| | | || ||||| ||| ||||||||||||||||||||||| || ||| | |
Sbjct 3740 TAGAGC-GAGGGAGGCACTGGAAACCATGGGAGCTTCAGTTTTCAGTGGGATCACACTCA 3798
Query 3570 CGAAGCTAGTTGGGGTAATTGTGCTCAG-TTTCTCAAGATCAGA-AGTCTTTGTGGTCTA 3627
| || || ||||| || || ||||| | ||| ||||||| || | | |||||||| ||
Sbjct 3799 CAAAACTTGTTGGAGTGATCGTGCTTTGCTTTG-CAAGATCTGAGA-TATTTGTGGTGTA 3856
Query 3628 CTACTTC-AAGATGTATCT-GGCACTAGTCCTCCTCGGTTTCTTGCACGGCCTTGTATTT 3685
|||||| || ||||| || ||| | || | |||| |||||||| || || || |||
Sbjct 3857 TTACTTCCAA-ATGTA-CTTGGCTTTGGTTATAATCGGCTTCTTGCATGGGCTCGT-TTT 3913
Query 3686 -TTACC 3690
|||||
Sbjct 3914 CTTACC 3919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 188577538737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5