BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913528
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17920.1 | Symbols: ATCIMS, ATMETS, ATMS1 | Cobalamin-indepe... 608 1e-173
AT3G03780.1 | Symbols: ATMS2, MS2 | methionine synthase 2 | chr... 403 5e-112
> AT5G17920.1 | Symbols: ATCIMS, ATMETS, ATMS1 | Cobalamin-independent
synthase family protein | chr5:5935038-5939487 FORWARD
LENGTH=2771
Length=2771
Score = 608 bits (329), Expect = 1e-173
Identities = 355/367 (97%), Gaps = 3/367 (1%)
Strand=Plus/Plus
Query 1 CTCTTTGCTGGTGTTGTTGATGGAAGGAACATCTGGGCCAACGACTTTGCTGCGTCCCTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 CTCTTTGCTGGTGTTGTTGATGGAAGGAACATCTGGGCCAACGACTTTGCTGCGTCCCTA 1102
Query 61 AGCACCTTGCAGGCACTTGA-GGACATTGTTGGTAAAGACAAGCTTGTGGTCTCAACCTC 119
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1103 AGCACCTTGCAGGCACTTGAAGG-CATTGTTGGTAAAGACAAGCTTGTGGTCTCAACCTC 1161
Query 120 CTGCTCTCTTCTCCACACCGCTGTTGATCTTATCAATGAGACTAAGCTTGATGATGAAAT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 CTGCTCTCTTCTCCACACCGCTGTTGATCTTATCAATGAGACTAAGCTTGATGATGAAAT 1221
Query 180 CAAGTCATGGTTGGCGTTTGCTGCCCAGAAGGTTGTTGAAGTGAATGCGTTGGCCAAGGC 239
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1222 CAAGTCATGGTTGGCGTTTGCTGCCCAGAAGGTCGTTGAAGTGAACGCTTTGGCCAAGGC 1281
Query 240 TTTGGCTGGTCAGAAGGATGAGGCTCTTTTCTCTGCCAATGCTGCGACTTTGGCTTCAAG 299
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1282 TTTGGCTGGTCAGAAGGACGAGGCTCTTTTCTCTGCCAATGCTGCGGCTTTGGCTTCAAG 1341
Query 300 GAGGTTTTCCCCCAAGAGTCACCAACGAGGGTGTTCAGAAGGCCGCTGCTGCTTTGAAGG 359
||| | |||||| ||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1342 GAGATCTTCCCC-AAGAGTCACCAACGAGGGTGTCCAGAAGGCTGCTGCTGCTTTGAAGG 1400
Query 360 GATCTGA 366
|||||||
Sbjct 1401 GATCTGA 1407
> AT3G03780.1 | Symbols: ATMS2, MS2 | methionine synthase 2 | chr3:957235-960980
FORWARD LENGTH=2617
Length=2617
Score = 403 bits (218), Expect = 5e-112
Identities = 322/371 (87%), Gaps = 11/371 (3%)
Strand=Plus/Plus
Query 1 CTCTTTGCTGGTGTTGTTGATGGAAGGAACATCTGGGCCAACGACTTTGCTGCGTCCCTA 60
|||||||||||||||||||| |||||||||||||||||||| ||| | ||||| || ||
Sbjct 941 CTCTTTGCTGGTGTTGTTGACGGAAGGAACATCTGGGCCAATGACCTCGCTGCCTCTCTC 1000
Query 61 AGCACCTTGCAGGCACTTGAGGACATTGTTGGTAAAGACAAGCTTGTGGTCTCAACCTCC 120
| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1001 ATCACCTTGCAGTCACTTGAGGGTGTTGTTGGTAAAGACAAGCTTGTGGTCTCAACCTCT 1060
Query 121 TGCTCTCTTCTCCACACCGCTGTTGATCTTATCAATGAGACTAAGCTTGATGATGAAATC 180
||||||||||||||||| || ||||| ||||| || |||||||||||||||| |||||||
Sbjct 1061 TGCTCTCTTCTCCACACTGCCGTTGACCTTATTAACGAGACTAAGCTTGATGCTGAAATC 1120
Query 181 AAGTCATGGTTGGCGTTTGCTGCCCAGAAGGTTGTTGAAGT-GAATGCGTTGGCCAAGGC 239
||||| ||| | || |||||||||||||||||||||||||| || || |||||||||||
Sbjct 1121 AAGTCGTGGCTAGCTTTTGCTGCCCAGAAGGTTGTTGAAGTTGAC-GCATTGGCCAAGGC 1179
Query 240 TTTGGCTGGTCAGA-AGGATGAG-GCTCTT-TTCTCTGCCAATGCTG-CGACTTTGGCTT 295
|||||| ||||||| | ||||| | | || ||| ||||||| |||| || | ||| |||
Sbjct 1180 TTTGGCCGGTCAGACAA-ATGAGAG-T-TTCTTCACTGCCAACGCTGACG-CATTGTCTT 1235
Query 296 CAAGGAGGTTTTCCCCCAAGAGTCACCAACGAGGGTGTTCAGAAGGCCGCTGCTGCTTTG 355
| ||||||| |||||| |||||||||||| ||| ||| |||||||| ||||||||||||
Sbjct 1236 CGAGGAGGTCTTCCCC-AAGAGTCACCAATGAGTCTGTCCAGAAGGCTGCTGCTGCTTTG 1294
Query 356 AAGGGATCTGA 366
|||||||||||
Sbjct 1295 AAGGGATCTGA 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17191570158
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5