BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913535
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT1G42980.1 | Symbols: | Actin-binding FH2 (formin homology 2)... 1055 0.0
> AT1G42980.1 | Symbols: | Actin-binding FH2 (formin homology
2) family protein | chr1:16133286-16135587 FORWARD LENGTH=1089
Length=1089
Score = 1055 bits (571), Expect = 0.0
Identities = 813/924 (88%), Gaps = 40/924 (4%)
Strand=Plus/Plus
Query 1 ATGGCAAGTAACTGTGCGACAATGCTTAGCAAGATTAAGATTCCTCTACCAGATATGCTC 60
|||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||
Sbjct 59 ATGGCAAGTAACTGTGAGAAAATGCTTAGCAAAATTAAGATTCCTCTACCAGATATGCTC 118
Query 61 AATGCAGTTCTAGATTTGGATTCTTCAGCTCTGATCATTGAACAGATTAAAAATCTAATC 120
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 119 AATGCAGTTCTAGATTTGGATTCTTCAGCTGTGATCATTGACCAGATTAAAAATCTAATC 178
Query 121 AAAATCTGTCGGAGCAAGGAAGAAATGGATCTGTTGAGGAACTCTGCTGGTGGTGACAAG 180
||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct 179 AAAATCTGTTGGAGCAAGGAAGAAATGGATCGGTTAAGGAATTCTGCTGGTGGTGACAAG 238
Query 181 GAAATGCTTGGAAAGTTTGAAGAGATTTTCGGGGAACTAATGAAGGTTCCGCGGATAGAA 240
||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 GAAGTGCTTGGAAAGTGTGAAGAGATTTTCGGGGAACTAATGATGGTTCCGCGGATAGAA 298
Query 241 CCAAAATTACGAGTGTTTGCTTTTAAGGTTGACTATTCTTCCAGGGTGAAAGACTTAAGA 300
|||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |
Sbjct 299 CCAAAATTACGAGTGTTTGCTTTTAAGGTTGAGTATCCTTCCAGGGTGAGTGACTTAAAA 358
Query 301 ATCTGGCTGAATACGATAATCGCTGCTACTAAAGAGATAATGGGATCTGTGAAGTTGCTT 360
|| ||| || |||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 359 ATGTGGATGCATACGATAATCGCTGCTACTAAAGAGATAACGGGATCTGTGAAGTTGTTT 418
Query 361 CGGATTATGCAAACAA-TTTCAACACTGGAAATTCTAGGAGGTTCTAATGCGGAGTGTGT 419
|||||||||||||||| ||| |||| || || ||||| |||||||||||| ||||||||
Sbjct 419 CGGATTATGCAAACAAGTTT-AACAATGCAAGTTCTAAGAGGTTCTAATGTGGAGTGTGG 477
Query 420 ACTGGCTAGTCTTGTTAGGTTATCTGATAATGTGGATTTGATGCATGACTTTTACAAGCT 479
||||| ||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct 478 ACTGGATAGTCTTGTTAAGTTATGTGATAATGTGTATTTGATGCATGACTTTTGCAAGCT 537
Query 480 TGTTGGTGAAAAAATGCCGGAATTGCTGGATTTTGGTAAAGACCTTGTTCACTTAGAAGC 539
| ||| | | || ||| | || ||||||||||||||||||||
Sbjct 538 -GCTGG--A-----T-------TT--TGG-T------AATGACCTTGTTCACTTAGAAGC 573
Query 540 TGCATCGAAGATTGAATTG-AATACGGTTGCTGAGAATATGCAACAGTTATACGACATCG 598
|||||||| |||||||||| || || || || | || |||||| |||||| ||||||||
Sbjct 574 TGCATCGAGGATTGAATTGGAA-ACCATTACTAATAAGATGCAAGAGTTATTCGACATCG 632
Query 599 AG-AGGGAGGTGGATGACGAGTTCATAGCTTCAGAAAATGATGGTGCAAATTTTGTCGGG 657
|| | | ||||| |||| |||||| |||||||||||||||||||||| |||||||| |||
Sbjct 633 AGGAAG-AGGTGAATGATGAGTTCCTAGCTTCAGAAAATGATGGTGCTAATTTTGT-GGG 690
Query 658 TT-CCGAAACGTGCTGTATGATTTTCTTGGTA-GAATTGATGCCGACGCGCAGTTGCTTA 715
| |||||||||| || ||||||||||| ||| || |||| | |||| ||||||||| |
Sbjct 691 CTACCGAAACGTGGTGCATGATTTTCTTTGTACGA-TTGACGGCGACAAGCAGTTGCTAA 749
Query 716 ATATCTTATACTCAGAAGCGGGAAGGA-TTGTAGATTCCTACATAAG-TGAGTATCCAAC 773
||||||||||| |||||| |||| ||| ||||| ||||||||||| | |||||||||||
Sbjct 750 ATATCTTATACGCAGAAGTGGGA-GGACTTGTAAATTCCTACATA-GCTGAGTATCCAAG 807
Query 774 TAGCGTTAGCTTCGAGGAAGTGACCAACATCCTGAACCGTTTCGTGGAAACGTTCTACAA 833
| | ||| ||||| |||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 808 TGGTGTTCGCTTCAAGGAAGCGACCAACATCCTGACCCGTTTCGTGGAAACGTTCTACAA 867
Query 834 GTCTCGCGAGGAGATTGAAAGACAAGCCGAGGCTGAGAGGGAGATACTGGAGAAA-GAAA 892
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 868 GTCTCGCGAGGAGATTGAAAGACAAGCCGAGGCTGAGAAGGAGATACTGGAGAAAAGAAA 927
Query 893 CAATGAACATCAACCAAAACGGGA 916
|||||||||||| ||||| ||||
Sbjct 928 -AATGAACATCAAACAAAATGGGA 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5