BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913538
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43000.1 | Symbols: | PLATZ transcription factor family pro... 782 0.0
> AT1G43000.1 | Symbols: | PLATZ transcription factor family protein
| chr1:16140816-16141655 FORWARD LENGTH=651
Length=651
Score = 782 bits (423), Expect = 0.0
Identities = 579/653 (89%), Gaps = 16/653 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAACGATGACGTAATGATTCCGCCATGGCTAAAACCAATGCTCCGAGCTGACTAC 60
||||||||||| |||||||||| |||||||||||||| ||||||||| |||||||| |||
Sbjct 1 ATGGAGAACGACGACGTAATGACTCCGCCATGGCTAACACCAATGCTTCGAGCTGATTAC 60
Query 61 TTTGTGACTTGTTCGATTCACGCA-AGATCGAGTAAGAGTGAATGTAATCTGTTTTGCTT 119
|| ||||||||||||||||| || | ||||||||| |||||||||||||||||||| ||
Sbjct 61 TTCGTGACTTGTTCGATTCATTCACA-ATCGAGTAAAAGTGAATGTAATCTGTTTTGTTT 119
Query 120 GGATTGTTTAGGCAATGCCTTTTGTTCTTATTGTTTTGATGATCACAGAGA-CCATCGTG 178
|||||||| |||||||||||||||||||| |||| | | | |||||||| | ||||||||
Sbjct 120 GGATTGTTCAGGCAATGCCTTTTGTTCTTCTTGTCTCGCTCATCACAGA-ACCCATCGTG 178
Query 179 TTGTTCAGATTCGACGATCTTCGTATCATAATGTTGTGAGAATGAGTGAGATTCAGAAAC 238
|| | |||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||
Sbjct 179 TTATCCAGATTCGACGATCGTCGTATCATAATGTGGTGAGAGTGAGTGAGATTCAAAAAC 238
Query 239 ATATTGATATCTCTTGTATTCAGACTTATGTTATCAATAGTGCTAAGATCTTCTTCCTAA 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 ATATTGATATCTCTTGTATTCAGACTTATGTTATCAATAGTGCTAAGATCTTCTTCTTAA 298
Query 299 ACGAGAGACCTCAGTGTAAAACGGGTAAAAGCGTAAACAAAACATGTCAGATCTGTTCTC 358
||| ||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||
Sbjct 299 ACGCGAGACCTCAATGTCGAACTGGTAAAAGCTTAAACAAAACATGTCAGATCTGTTCTC 358
Query 359 GTAACCTTCTCGATTCGTTCCGGTTCTGTTCTCTTGCTTGTAAGCTTGAATGTGTCAAGA 418
||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 359 GTAACCTTCTCGATTCGTTCCTGTTCTGTTCTCTTGCTTGTAAGCTTGAAGGTGTGAAGA 418
Query 419 GTGGGGAGGATCCAAATTTGACCTTCTGTC-TCG-G-------TGA---CTCCTCGAAGA 466
||| ||||||||||| |||| || | || | | | ||| ||| |||||||
Sbjct 419 ATGGAGAGGATCCAAACCTGACTTTATTTCATAGTGGAAAGAGTGATGACTCGTCGAAGA 478
Query 467 TCCGCAATAGCGGAATTTGTAGCCGGTTGATCAACGGAATCTCGATCGCAGTTGATGATC 526
|| ||||| ||| ||||||||||| |||||| |||| |||||||| || ||||| || |
Sbjct 479 TCATCAATACCGGGATTTGTAGCCGTTTGATCGACGGGATCTCGATTGCGGTTGACGACC 538
Query 527 AACGCAGTGAAACCGCTGCTGTGTTATCTCCAAAGACACCTTCAATAGAAAGCCACCGGA 586
||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 539 AACGCAGCGAAACCGCGGGTGTGTTATCTCCAGAGACACCTTCAATAGAAAGCCACCGGA 598
Query 587 GTTACCCAATGAAGAGTAGAAGAAAGGGTATACCTCACCGAGCACCTTTCTAA 639
|||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 599 ATTACCCAATGAAGAGTAGAAGAAAGGGTATACCTCAACGAGCACCTTTCTAA 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5