BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913545
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13130.1 | Symbols: | Cellulase (glycosyl hydrolase family ... 505 5e-142
> AT1G13130.1 | Symbols: | Cellulase (glycosyl hydrolase family
5) protein | chr1:4474720-4477941 FORWARD LENGTH=1786
Length=1786
Score = 505 bits (273), Expect = 5e-142
Identities = 353/392 (90%), Gaps = 4/392 (1%)
Strand=Plus/Plus
Query 400 AACGATGTGATGGTGATATTAGACAACCACTTAACCAAACCAGGGTGGTGCTGTGCCGAC 459
|||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| ||
Sbjct 457 AACGATGTGATGGTGATATTAGACAACCACCTAACTAAACCAGGGTGGTGCTGCGCCAAC 516
Query 460 AACGACGGTAATGATTT-TTCCGGTGACAAGTTCTTTGATCCCACCGTTTGGGCCGCCGC 518
|||| ||||| | ||| || ||||||| ||||||| ||||| ||||| |||| |||||
Sbjct 517 GACGATGGTAACGGTTTCTT-CGGTGACCAGTTCTTCGATCCTACCGTATGGGTTGCCGC 575
Query 519 TTT-GAGTAAAATGACTGCGACCTTCGACGGTGTCTCTAATGTTGTTGGCATGAGTCTAA 577
||| || |||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 576 TTTAAAG-AAAATGGCTGCGACCTTCAACGGTGTCTCTAATGTTGTTGGCATGAGTCTAA 634
Query 578 GGAATGAACTTACAGGGCCTAAACAAAACGTGAACGATTGGTTCAAGTATATGCAACAAG 637
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 635 GGAATGAACTTAGAGGGCCTAAACAAAACGTTAACGATTGGTTCAAGTATATGCAACAAG 694
Query 638 GAGCGGAAGCAGTTCACTCAGCAAACAAGAACGTACTTGTAATCCTGTCCGGTCTCACCT 697
|||||||||||||||| ||||||||||| || |||||||||||||| |||||||||| ||
Sbjct 695 GAGCGGAAGCAGTTCATTCAGCAAACAACAAGGTACTTGTAATCCTCTCCGGTCTCAGCT 754
Query 698 TTGACACCGACCTCTCCTTCGTTAGGTGTCTACCTGTAAACCTATCCTTCACCGGAAAAC 757
| ||| | || |||||||| ||||||| || ||| ||||| |||||||||||||||||||
Sbjct 755 TCGACGCTGATCTCTCCTTTGTTAGGTCTCGACCCGTAAAGCTATCCTTCACCGGAAAAC 814
Query 758 TCGTCTTTGAGCTGCATTGGTATTCTTTCAGT 789
||||||| ||||| ||||||||||||||||||
Sbjct 815 TCGTCTTCGAGCTCCATTGGTATTCTTTCAGT 846
Score = 335 bits (181), Expect = 7e-91
Identities = 204/215 (95%), Gaps = 1/215 (0%)
Strand=Plus/Plus
Query 96 AGCTAAGCAACCGGTGGACGCAGTGGCCAAGAAGATAGTGGAAATGAGTTTCAATTGTGT 155
||| || ||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 214 AGC-AAACAACCAGTGGACGCAGTGGCCAAGAAGATAGTGGAAATGGGTTTCAATTGTGT 272
Query 156 TAGGTTAACTTGGCCGTCAGATTTGATGACTAATGAGACATTGGCTTATAATGTCACAGT 215
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 273 TAGGTTAACTTGGCCGTTGGATTTGATGACTAATGAGACATTGGCTAATAATGTCACAGT 332
Query 216 GAGACAATCTTTTCAAAGCTTTGGTCTTAATGATGACATTGTTGGCTTCAAAACTAACAA 275
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 333 AAGACAATCTTTTCAAAGCCTTGGTCTTAATGATGACATTGTTGGCTTCCAAACTAACAA 392
Query 276 CCCCTCCATTATTGATCTCTCCCTCATTGAAGCTT 310
||||||||||||||||||| |||||||||||||||
Sbjct 393 CCCCTCCATTATTGATCTCCCCCTCATTGAAGCTT 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62098074165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5