BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913547
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43190.1 | Symbols: PTB3 | polypyrimidine tract-binding prot... 2194 0.0
> AT1G43190.1 | Symbols: PTB3 | polypyrimidine tract-binding protein
3 | chr1:16275108-16278624 REVERSE LENGTH=1753
Length=1753
Score = 2194 bits (1188), Expect = 0.0
Identities = 1262/1299 (97%), Gaps = 0/1299 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGAATCTTCCAAAGTCATTCATGTTCGTAATGTTGGTCATGAGATTTCTGAAAAT 60
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 131 ATGGCGGAATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAAAAT 190
Query 61 GATTTGCTTCAACTTTTTCAACCATTTGGGGTTATAACTAAGCTTGTGATGCTCAGGGCA 120
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 191 GATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACTAAGCTTGTGATGCTCAGGGCA 250
Query 121 AAGAATCAGGCTCTTCTTCAAATGCAAGATGTTTCTTCAGCAATCAGTGCTCTTCAGTTT 180
||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||
Sbjct 251 AAGAATCAGGCTCTTCTCCAAATGCAAGATGTTTCTTCTGCAGTTAGTGCTCTTCAGTTT 310
Query 181 TTTACTAATGTTCAGCCAACCATAAGAGGTAGGAATGTGTATGTCCAATTCTCGTCTCAC 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 311 TTTACTAATGTTCAGCCAACTATAAGAGGTAGGAATGTGTATGTCCAATTCTCTTCTCAC 370
Query 241 CAAGAATTGACAACGATAGAGCAGAATATTCATGGACGGGAAGATGAGCCGAATCGTATT 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 371 CAAGAATTGACAACGATAGAGCAGAATATTCATGGAAGGGAAGATGAGCCGAACCGTATT 430
Query 301 CTCTTAGTCACAATCCATCACATGCTGTATCCAATTACTGTTGACGTGCTGCATCAAGTT 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 431 CTCTTAGTCACAATCCATCACATGCTGTATCCAATTACTGTTGACGTCCTGCATCAAGTT 490
Query 361 TTTTCTCCCTATGGATTTGTCGAGAAGCTTGTCACTTTCCAGAAGTCTGCTGGTTTTCAA 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 491 TTTTCTCCCTATGGATTTGTCGAGAAGCTCGTCACTTTCCAGAAGTCTGCTGGTTTTCAA 550
Query 421 GCTCTTATACAGTATCAGGTACAACAGTGTGCTGCCTCTGCTAGAACTGCTCTACAGGGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 GCTCTTATACAGTATCAGGTACAACAGTGTGCTGCCTCTGCTAGAACTGCTCTACAGGGT 610
Query 481 CGTAACATATATGATGGGTGTTGTCAGTTGGATATCCAGTTCTCAAACCTTGAGGAGCTG 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 CGTAACATATATGACGGGTGTTGTCAGTTGGATATCCAGTTCTCAAACCTTGAGGAGCTG 670
Query 541 CAAGTAAATTACAACAATGATCGATCTAGAGATTATACAAACCCAAACCTGCCTGCGGAG 600
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 671 CAAGTAAATTACAACAATGATCGATCTAGGGATTATACAAATCCAAACCTGCCTGCAGAA 730
Query 601 CAAAAAGGCCGTTCATCGCATCCTGGCTATGGTGATGTAGGAGTGGCATATCCTCAGATG 660
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 731 CAAAAAGGCCGTTCATCGCATCCTTGCTATGGTGATACAGGAGTGGCATATCCTCAGATG 790
Query 661 GCAAACACATCTGCGATTGCAGCGGCCTTTGGAGGAGGCTTGCCTCCGGGTATAACCGGC 720
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 791 GCAAACACATCAGCGATTGCAGCTGCCTTTGGAGGAGGCTTGCCTCCGGGTATAACCGGC 850
Query 721 ACAAATGATAGGTGTACAGTCCTTGTCTCCAACCTGAATGCAGATAGTATTGATGAGGAT 780
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 851 ACAAATGATAGGTGTACAGTCCTTGTCTCTAACCTGAATGCAGATAGTATTGATGAAGAT 910
Query 781 AAGCTATTCAATCTATTTTCTCTTTACGGGAACATTGTAAGGATTAAGCTTCTTCGGAAC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 AAGCTATTCAATCTATTTTCTCTTTACGGGAACATTGTAAGGATTAAGCTTCTTCGGAAC 970
Query 841 AAACCTGACCATGCCCTTGTCCAAATGGGCGATGGTTTCCAAGCCGAACTTGCAGTACAT 900
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 971 AAACCTGACCATGCCCTTGTCCAAATGGGCGATGGTTTCCAAGCTGAACTTGCAGTACAT 1030
Query 901 TTCCTCAAGGGAGCGGTGCTGTTTGGTAAGCGGCTAGAAGTAAACTTCTCAAAGCATCCA 960
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1031 TTCCTCAAGGGAGCAATGCTGTTTGGTAAGCGGTTAGAAGTAAACTTCTCAAAGCATCCA 1090
Query 961 AACATAACACCAGGCACAGACTCTCATGATTACGTAAACTCTAACCTGAACCGCTTCAAC 1020
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1091 AATATAACACCAGGCACAGACTCTCATGATTATGTAAACTCTAACCTGAACCGCTTCAAC 1150
Query 1021 CGCAATGCTGCAAAGAACTACCGCTATTGCTGCTCCCCTACAAAGATGATTCACTTATCG 1080
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 CGCAATGCTGCAAAGAATTACCGCTATTGCTGCTCCCCTACAAAGATGATTCACTTATCG 1210
Query 1081 ACTCTTCCTCAAGACGTGACAGAGGAGGAAGTGATGAACCATGTCCAAGAACACGGTGCA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 ACTCTTCCTCAAGACGTGACAGAGGAGGAAGTGATGAACCATGTCCAAGAACACGGTGCA 1270
Query 1141 ATAGTGAACACAAAAGTGTTTGAGATGAACGGGAAAAAGCAAGCTCTAGTGCAGTTTGAG 1200
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1271 GTAGTGAACACAAAAGTGTTTGAGATGAACGGGAAAAAGCAAGCTCTGGTACAGTTTGAG 1330
Query 1201 AACGAGGAGGAAGCTGCGGAAGCATTGGTGTGCAAGCACGCGACTTCTCTAGGCGGATCA 1260
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1331 AACGAGGAGGAAGCTGCGGAAGCATTGGTATGCAAGCACGCGACTTCTCTAGGCGGATCA 1390
Query 1261 ATTATCAGAATCTCCTTCTCCCAGCTACAGACGATTTAA 1299
|||||||||||||||||||||||||||||||||||||||
Sbjct 1391 ATTATCAGAATCTCCTTCTCCCAGCTACAGACGATTTAA 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5