BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913551

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G29028.1 | Symbols:  | transposable element gene | chr5:1106...   106    1e-22


> AT5G29028.1 | Symbols:  | transposable element gene | chr5:11060647-11062141 
FORWARD LENGTH=1495
Length=1495

 Score =  106 bits (57),  Expect = 1e-22
 Identities = 72/79 (91%), Gaps = 1/79 (1%)
 Strand=Plus/Plus

Query  1    ATGCCTATGTGGATGGATCCAGAGGTATGGAAGGGCCTCAAAGTTTTTTGGATTGATCCA  60
            ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||
Sbjct  437  ATGCCTATGTGGATGAATCCTGAGGTATGGAAGGGCCTCAAAGTTTTTTGGCTTGATCCA  496

Query  61   CATTCTGAAGATAAAAGTG  79
             | |||||| ||||| |||
Sbjct  497  TAGTCTGAAAATAAA-GTG  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5