BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913552

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G29015.1 | Symbols:  | transposable element gene | chr5:1103...   167    5e-41


> AT5G29015.1 | Symbols:  | transposable element gene | chr5:11031699-11038817 
FORWARD LENGTH=7119
Length=7119

 Score =  167 bits (90),  Expect = 5e-41
 Identities = 122/137 (89%), Gaps = 3/137 (2%)
 Strand=Plus/Plus

Query  33    CAA-AGGACGTATTGTTGGAGTCTCTGATGAAGTACCATTACAAAACACACAAGGAGAGA  91
             ||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  6984  CAAGAGGTCGTATTGTTGGAGTCTCTGATGAAGTACCACTACAAAACACACAAGGAGAGA  7043

Query  92    TCCATGTTCCAGAACATGCACTAGAAAGCATCATACTTATTGACCA-GAACAATCGAGAA  150
             | ||||||||||||||| |||| |||||| || ||| | |||| || || ||||||| ||
Sbjct  7044  TTCATGTTCCAGAACATACACTCGAAAGCGTCGTACATCTTGATCAAGA-CAATCGACAA  7102

Query  151   CTAGAAGAAGCTGGTGA  167
             ||||||||| |||||||
Sbjct  7103  CTAGAAGAACCTGGTGA  7119



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11913456513


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5