BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913561
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein ki... 797 0.0
> AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:26216126-26218153 REVERSE LENGTH=2028
Length=2028
Score = 797 bits (431), Expect = 0.0
Identities = 501/535 (94%), Gaps = 3/535 (1%)
Strand=Plus/Plus
Query 510 ACATCGAAACATGGTGCAACTCATTGGTTGGTGTAATGaaaaaaaCGAGTTCTTGCTGAT 569
|||||||||| | ||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1209 ACATCGAAACCTCGTGCAGCTCATCGGTTGGTGTAATGAGAAAAATGAGTTCTTGCTGAT 1268
Query 570 ATATGAGTTAGTGCTAAATGGTAGCTTGAACTCCCACCTCTTTGGCAAAAGACCCCATTT 629
|||||||||||| | |||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 1269 ATATGAGTTAGTTCCAAATGGTAGCTTGAACTCTCACCTCTTTGGGAAAAGACCCAATTT 1328
Query 630 ACTTTCTTGGGACATAAGGTACAAGATAGCTCTTGGTTTAGCCTCTGCTCTGCTTTATCT 689
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1329 ACTTTCTTGGGACATAAGGTACAAGATAGGTCTTGGTTTAGCCTCTGCTCTGCTTTATCT 1388
Query 690 TCATGAAGAATGGGATCAATGTGTACTGCACAGAGAAATCAAAGCAAGCAATATAATGCT 749
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1389 TCATGAAGAATGGGATCAATGTGTACTGCACAGAGACATCAAGGCAAGTAATATAATGCT 1448
Query 750 TGACAGTGATTTCAATGTAAAGTTAGGTGATTTCGGTTTGGCTCGGGTTATGAACCATGA 809
||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 1449 TGACAGTGAATTCAATGTAAAGTTAGGTGATTTCGGGTTGGCTCGGCTAATGAACCATGA 1508
Query 810 ACATGGTTCCCATACAACAGGATTGGCTGGAACTTTTGGGTACATGGCACATGAATATGT 869
|| ||||||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 1509 ACTTGGTTCCCATACAACGGGGTTGGCTGGAACTTTTGGGTACATGGCACCTGAATATGT 1568
Query 870 AACGAAAGGAAGTGCGAGTAAAGAGTCTGATATATATAGCTTTGGAATTGTTTTACTAGA 929
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1569 AATGAAAGGAAGTGCGAGTAAAGAATCTGATATATATAGCTTTGGAATTGTTTTACTAGA 1628
Query 930 GATTGTCACAGGGAGAAAATCGCTGGAACGAACGCAAGAAGATAACAGTGATTCAGAGAG 989
|||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||
Sbjct 1629 GATTGTCACAGGGAGAAAATCGCTGGAACGTACACAAGAAGATAACAGTGATACAGAGAG 1688
Query 990 T-A--ATGAGAAGAGTCTTGTGGAGAAAGTTTGGAAACTTTATGGAAAACAAGAA 1041
| | ||||||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 1689 TGATGATGAGAAGAGTCTAGTGGAGAAAGTTTGGGAGCTTTATGGAAAACAAGAA 1743
Score = 420 bits (227), Expect = 2e-116
Identities = 308/345 (89%), Gaps = 13/345 (4%)
Strand=Plus/Plus
Query 69 GTTCAAGCCTTTCTTACATCATCGACCTCGC-AA------ACCATCAGAAGTAATGTTCG 121
||||||||||||||||||||||||||||||| || |||||||| || |||||||
Sbjct 689 GTTCAAGCCTTTCTTACATCATCGACCTCGCTAAGGTTCTGCCATCAGATGTTATGTTCG 748
Query 122 GGTTTATAGCTGCTGCTGGAAGAAACACAGAGGAACATAGACTTTTATCATGGGAGCTCA 181
||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 749 GGTTTATAGCTGCCGCTGGGACAAACACAGAGGAACATAGACTTTTATCATGGGAGCTCA 808
Query 182 GTTCAACTTTGGATATCGAGAAAGCCGATAGCAAGATAGGATTGGTAGTTGGCATTTCGG 241
|||||| |||||| | ||| ||||||||||||| ||||||| | ||| ||||||||||||
Sbjct 809 GTTCAAGTTTGGACAGCGACAAAGCCGATAGCAGGATAGGACTAGTAATTGGCATTTCGG 868
Query 242 TTTCCGGGttt-tttttACTGATAGTTT-TGGTCCA-CACGATCGTGGTGGTTTGGTCAC 298
|||||||||| ||||| |||| |||| ||||| | ||| | |||||||||||||||||
Sbjct 869 CTTCCGGGTTTGTTTTT-CTGAC-GTTTATGGTC-ATCACAACCGTGGTGGTTTGGTCAC 925
Query 299 GGAAGCAAAGAAAAAAGAAAGACAGAGATATAGCAAACATGATATCGATAAACGAAGATC 358
||||||||||||| |||||||| |||||||||| ||||||||||||||||||| |||| |
Sbjct 926 GGAAGCAAAGAAAGAAGAAAGAAAGAGATATAGAAAACATGATATCGATAAACAAAGACC 985
Query 359 TTGAAAGGGAAGCAGGACCAAGAAAGTTTTCTTATAAAGATCTTG 403
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 986 TTGAAAGGGAAGCAGGACCAAGAAAGTTTTCTTATAAGGATCTTG 1030
Score = 174 bits (94), Expect = 1e-42
Identities = 102/106 (96%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 404 AGCTAGGTGAAGGAGGATTTGGAGCGGTTTATGAAGGAAATTTGAAAGAAATCAATACAA 463
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1064 AGCTAGGTGAAGGAGGATTTGGAGCAGTTTATGAAGGAAACTTGAAAGAAATCAATACAA 1123
Query 464 TGGTTGCGGTGAAGAAATTATCCGGTGATTCAAGGCAGCGAAAGAA 509
||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1124 TGGTTGCGGTGAAGAAACTATCCGGTGATTCAAGGCAGGGAAAGAA 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5