BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913565
Length=195
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47240.1 | Symbols: CER8, LACS1 | AMP-dependent synthetase a... 169 1e-41
AT5G59810.1 | Symbols: ATSBT5.4, SBT5.4 | Subtilase family prot... 100 4e-21
> AT2G47240.1 | Symbols: CER8, LACS1 | AMP-dependent synthetase
and ligase family protein | chr2:19392558-19397831 FORWARD
LENGTH=2407
Length=2407
Score = 169 bits (91), Expect = 1e-41
Identities = 99/103 (96%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 79 AAAGAACACATCATTTCAGAACTGAAGTCCACGGCAGAGAAGAACAAGCTAAGAAAGTTT 138
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1977 AAAGAACACATCATTTCAGAACTGAAGTCCACGGCAGAAAAGAACAAGCTAAGAAAGTTT 2036
Query 139 GAGTACATCAAAGCGGTGGCGGTGGAGGCAAAACCTTTCGACG 181
|||||||||||||||||| | |||||| |||||||||||||||
Sbjct 2037 GAGTACATCAAAGCGGTGACAGTGGAGACAAAACCTTTCGACG 2079
> AT5G59810.1 | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein
| chr5:24096815-24100557 REVERSE LENGTH=2587
Length=2587
Score = 100 bits (54), Expect = 4e-21
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 2 TGGAGTCCTGCTGCTATCCGCTCAGCCATCATGACAACTTCAAGAACCAGAGACAACAGA 61
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1929 TGGAGTCCTGCAGCTATCCGCTCAGCCATCATGACAACTTCAAGAACCAGAAACAACAGA 1988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8651832372
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5