BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913571 Length=378 Score E Sequences producing significant alignments: (Bits) Value AT3G16730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Non-SMC c... 110 1e-23 > AT3G16730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | chr3:5695410-5699167 REVERSE LENGTH=2579 Length=2579 Score = 110 bits (59), Expect = 1e-23 Identities = 81/92 (88%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11 GGTATTCTTCTAGATTCTCCGACAAATCAACTTCCCAATTAGTCATTGAATCCCTCTCCA 70 |||| |||||||| |||||||||||||||||||||||||||| || ||||||||||| Sbjct 419 GGTACTCTTCTAGCTTCTCCGACAAATCAACTTCCCAATTAGCCACCAAATCCCTCTCCG 360 Query 71 GCTGTACCGTGTGGATCCTCTCGCCGCGAACT 102 ||||||| || || |||||||||||||| ||| Sbjct 359 GCTGTACTGTATGAATCCTCTCGCCGCGGACT 328 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17794783146 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5