BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913571

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16730.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Non-SMC c...   110    1e-23


> AT3G16730.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Non-SMC 
condensin II complex, subunit H2-like (InterPro:IPR009378); 
Has 249 Blast hits to 211 proteins in 82 species: Archae - 
0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses 
- 0; Other Eukaryotes - 66 (source: NCBI BLink). | chr3:5695410-5699167 
REVERSE LENGTH=2579
Length=2579

 Score =  110 bits (59),  Expect = 1e-23
 Identities = 81/92 (88%), Gaps = 0/92 (0%)
 Strand=Plus/Minus

Query  11   GGTATTCTTCTAGATTCTCCGACAAATCAACTTCCCAATTAGTCATTGAATCCCTCTCCA  70
            |||| |||||||| |||||||||||||||||||||||||||| ||   ||||||||||| 
Sbjct  419  GGTACTCTTCTAGCTTCTCCGACAAATCAACTTCCCAATTAGCCACCAAATCCCTCTCCG  360

Query  71   GCTGTACCGTGTGGATCCTCTCGCCGCGAACT  102
            ||||||| || || |||||||||||||| |||
Sbjct  359  GCTGTACTGTATGAATCCTCTCGCCGCGGACT  328



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17794783146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5