BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913582
Length=453
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15910.1 | Symbols: | XH/XS domain-containing protein | chr... 294 4e-79
AT4G00380.1 | Symbols: | XH/XS domain-containing protein | chr... 272 2e-72
> AT1G15910.1 | Symbols: | XH/XS domain-containing protein | chr1:5465336-5469125
FORWARD LENGTH=2453
Length=2453
Score = 294 bits (159), Expect = 4e-79
Identities = 210/234 (90%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 223 GAAGTGGTTGACGAGGAGGATGAGCAGCTGAATAAGCTTAAAGGAGAGTGGGG-AGAAGA 281
|||||||| |||||||| |||||||||||||| ||||||||| |||||||||| | ||||
Sbjct 1821 GAAGTGGTAGACGAGGATGATGAGCAGCTGAAGAAGCTTAAAAGAGAGTGGGGTA-AAGA 1879
Query 282 GGTGCATAATGAAGTTAAAACAGATCTTGAGGAGATGAATGAGTATAATGCAAGTGGTCG 341
||||||||| | ||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1880 GGTGCATAACGCAGTAAAAACAGCTCTTGTGGAGATGAATGAGTATAATGCAAGTGGTCG 1939
Query 342 GTACACAAATCTAGAACTGTGGAACTTCAAAGAAGGAAGAAAAGCAA-TACTGAAGGAAG 400
|||||||| || ||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 1940 GTACACAACTCCAGAACTGTGGAACTTCAAAGAAGGAAGAAAAGCCACT-CTGAAGGAAG 1998
Query 401 TGTTTAGTTTCATTTTAGA-CGACATCAAAACTCTGAAACGCAAAAGAACCTGA 453
|| ||| ||||||| || |||||| |||| ||||||||||||||||||||||
Sbjct 1999 TGATTACCTTCATTTC-GAACGACATAAAAATTCTGAAACGCAAAAGAACCTGA 2051
> AT4G00380.1 | Symbols: | XH/XS domain-containing protein | chr4:167959-170974
FORWARD LENGTH=2170
Length=2170
Score = 272 bits (147), Expect = 2e-72
Identities = 208/236 (88%), Gaps = 10/236 (4%)
Strand=Plus/Plus
Query 223 GAAGTGGTTGACGAGGAGGATGAGCAGCTGAATAAGCTTAAAGGAGAGTGGGGAGAAGAG 282
|||||||| |||||||| |||||||||||||| ||||||||| ||||||||||| |||||
Sbjct 1678 GAAGTGGTAGACGAGGATGATGAGCAGCTGAAGAAGCTTAAAAGAGAGTGGGGAAAAGAG 1737
Query 283 GTGCATAATGAAGTTAAAA-CAGATCTTGAGGAGATGAATGAGTATAATGCAAGTGGTCG 341
|||||||| | || ||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1738 GTGCATAACGCAG-TAAAAGCAGCTCTTGTGGAGATGAATGAGTATAATGCAAGTGGTCG 1796
Query 342 GTACAC-AAATCTAGAACTGTGGAACTTCAAAGAAGGAAGAAAAGCAA-TACTGAAGGAA 399
|||| | | || ||||||||||||||||||||||||||||||||| | | || ||||||
Sbjct 1797 GTACCCGACTTC-AGAACTGTGGAACTTCAAAGAAGGAAGAAAAGCCACT-CTCAAGGAA 1854
Query 400 GTGTTTA-GTTTCATTTTAGAC-GACATCAAAACTCTGAAACGCAAAAGAACCTGA 453
||| ||| ||| ||||| | || ||||| |||| ||||||||||||||||||||||
Sbjct 1855 GTGATTACGTT-CATTTCA-ACCGACATAAAAAATCTGAAACGCAAAAGAACCTGA 1908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21564864321
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5