BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913583 Length=333 Score E Sequences producing significant alignments: (Bits) Value AT1G43765.1 | Symbols: | other RNA | chr1:16537511-16538091 FO... 357 4e-98 AT1G43770.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 294 3e-79 > AT1G43765.1 | Symbols: | other RNA | chr1:16537511-16538091 FORWARD LENGTH=406 Length=406 Score = 357 bits (193), Expect = 4e-98 Identities = 235/255 (92%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 22 CCTGTTTGTCAAACTTGTGGCGACATTGGTTTTGAAGAAGCACTAGTCTTTTGTGACTCT 81 ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 56 CCTGTTTGTGAAACTTGTGGCGACATAGGTTTTGAAGAAGCACTTGTCTTTTGTGACTCT 115 Query 82 TGTAAGATTGAGTCTATTCACCGCTATTGCATAGGCATAACACCGACTCCTTTCACGGAA 141 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 116 TGTAAGATTGAGTCTATACACCGCTATTGCATAGGCATAACACCGACTCCTTTTACGGAA 175 Query 142 TACATAACTTGGATTTGTGAGGACTGTGATGCGAGTGACAGTGATTCTGATTGCAATGAA 201 |||||||||||||| |||||||| ||||||| ||||||||||||||||||||| || ||| Sbjct 176 TACATAACTTGGATCTGTGAGGATTGTGATGAGAGTGACAGTGATTCTGATTGTAAAGAA 235 Query 202 GTTGATCAGACTCCTAAGCTTACAAATATCTTgaagaagaa-gacgaagaaa-aagaaga 259 | ||||||||| ||||||||||| ||||||||||||||| ||| || ||| ||||||| Sbjct 236 CTGGATCAGACTGCTAAGCTTACACATATCTTGAAGAAGAGTGAC-AA-AAAGAAGAAGA 293 Query 260 agaagaagaagaaga 274 ||| ||||||||||| Sbjct 294 AGAGGAAGAAGAAGA 308 > AT1G43770.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:16548441-16551909 FORWARD LENGTH=1850 Length=1850 Score = 294 bits (159), Expect = 3e-79 Identities = 197/215 (92%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 1 ATGTCTGTAAATATCAAGGCG-CCTGTTTGTCAAACTTGTGGCGACATTGGTTTTGAAGA 59 |||||| || || |||||| | |||||||||||||||||||||||||| ||||||||||| Sbjct 69 ATGTCTTTACATGTCAAGG-GACCTGTTTGTCAAACTTGTGGCGACATAGGTTTTGAAGA 127 Query 60 AGCACTAGTCTTTTGTGACTCTTGTAAGATTGAGTCTATTCACCGCTATTGCATAGGCAT 119 |||||| ||||||||||||||||||| | ||||||||||||||||||||||| |||| || Sbjct 128 AGCACTTGTCTTTTGTGACTCTTGTATGTTTGAGTCTATTCACCGCTATTGCTTAGGGAT 187 Query 120 AACACCGACTCCTTTCACGGAATACATAACTTGGATTTGTGAGGACTGTGAT-GCGAGTG 178 |||||||| |||||| ||||||||||||||||||||||||||||| |||||| | |||| Sbjct 188 AACACCGATTCCTTTTACGGAATACATAACTTGGATTTGTGAGGATTGTGATAAC-AGTG 246 Query 179 ACAGTGATTCTGATTGCAATGAAGTTGATCAGACT 213 | ||||||||||||||||||||||||||||||||| Sbjct 247 AGAGTGATTCTGATTGCAATGAAGTTGATCAGACT 281 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15532734441 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5