BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913583

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G43765.1 | Symbols:  | other RNA | chr1:16537511-16538091 FO...   357    4e-98
  AT1G43770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily...   294    3e-79


> AT1G43765.1 | Symbols:  | other RNA | chr1:16537511-16538091 
FORWARD LENGTH=406
Length=406

 Score =  357 bits (193),  Expect = 4e-98
 Identities = 235/255 (92%), Gaps = 4/255 (2%)
 Strand=Plus/Plus

Query  22   CCTGTTTGTCAAACTTGTGGCGACATTGGTTTTGAAGAAGCACTAGTCTTTTGTGACTCT  81
            ||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  56   CCTGTTTGTGAAACTTGTGGCGACATAGGTTTTGAAGAAGCACTTGTCTTTTGTGACTCT  115

Query  82   TGTAAGATTGAGTCTATTCACCGCTATTGCATAGGCATAACACCGACTCCTTTCACGGAA  141
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  116  TGTAAGATTGAGTCTATACACCGCTATTGCATAGGCATAACACCGACTCCTTTTACGGAA  175

Query  142  TACATAACTTGGATTTGTGAGGACTGTGATGCGAGTGACAGTGATTCTGATTGCAATGAA  201
            |||||||||||||| |||||||| ||||||| ||||||||||||||||||||| || |||
Sbjct  176  TACATAACTTGGATCTGTGAGGATTGTGATGAGAGTGACAGTGATTCTGATTGTAAAGAA  235

Query  202  GTTGATCAGACTCCTAAGCTTACAAATATCTTgaagaagaa-gacgaagaaa-aagaaga  259
             | ||||||||| ||||||||||| |||||||||||||||  ||| || ||| |||||||
Sbjct  236  CTGGATCAGACTGCTAAGCTTACACATATCTTGAAGAAGAGTGAC-AA-AAAGAAGAAGA  293

Query  260  agaagaagaagaaga  274
            ||| |||||||||||
Sbjct  294  AGAGGAAGAAGAAGA  308


> AT1G43770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily 
protein | chr1:16548441-16551909 FORWARD LENGTH=1850
Length=1850

 Score =  294 bits (159),  Expect = 3e-79
 Identities = 197/215 (92%), Gaps = 4/215 (2%)
 Strand=Plus/Plus

Query  1    ATGTCTGTAAATATCAAGGCG-CCTGTTTGTCAAACTTGTGGCGACATTGGTTTTGAAGA  59
            |||||| || || |||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct  69   ATGTCTTTACATGTCAAGG-GACCTGTTTGTCAAACTTGTGGCGACATAGGTTTTGAAGA  127

Query  60   AGCACTAGTCTTTTGTGACTCTTGTAAGATTGAGTCTATTCACCGCTATTGCATAGGCAT  119
            |||||| ||||||||||||||||||| | ||||||||||||||||||||||| |||| ||
Sbjct  128  AGCACTTGTCTTTTGTGACTCTTGTATGTTTGAGTCTATTCACCGCTATTGCTTAGGGAT  187

Query  120  AACACCGACTCCTTTCACGGAATACATAACTTGGATTTGTGAGGACTGTGAT-GCGAGTG  178
            |||||||| |||||| ||||||||||||||||||||||||||||| ||||||  | ||||
Sbjct  188  AACACCGATTCCTTTTACGGAATACATAACTTGGATTTGTGAGGATTGTGATAAC-AGTG  246

Query  179  ACAGTGATTCTGATTGCAATGAAGTTGATCAGACT  213
            | |||||||||||||||||||||||||||||||||
Sbjct  247  AGAGTGATTCTGATTGCAATGAAGTTGATCAGACT  281



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15532734441


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5