BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913584
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43770.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1088 0.0
AT1G43765.1 | Symbols: | other RNA | chr1:16537511-16538091 FO... 337 2e-91
> AT1G43770.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:16548441-16551909 FORWARD LENGTH=1850
Length=1850
Score = 1088 bits (589), Expect = 0.0
Identities = 861/983 (88%), Gaps = 56/983 (6%)
Strand=Plus/Plus
Query 366 GGGATCTAAGAGAGAAGAAAGCTCAGGTAGCAGAAAGCCTCATGAATTGACTGGTTTAGT 425
||| ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 359 GGGGTCTAAGAGAGAAGAAAGCTCATGTAGCAGAAAACCTCATGAATTGACTTGTTTAGA 418
Query 426 TGGAGATAGAGCATCTGTTTCGGAGGCGGACA-AGTCATCTAGTGTACCAGATCATAGCT 484
|||| || ||| |||||||| |||||| | || | ||||||||||| ||||||||||| |
Sbjct 419 TGGAAATGGAGAATCTGTTTTGGAGGCTG-CAGATTCATCTAGTGTGCCAGATCATAGTT 477
Query 485 CTTGTACCAGCAAAAGGAAAGAAGTTGATC--A--G---A-C-TGGACATAACTTGGaga 535
||||||| |||||||||||||||||||||| | | | | |||||||| ||||||||
Sbjct 478 CTTGTACTAGCAAAAGGAAAGAAGTTGATCAGACTGCTAATCTTGGACATATCTTGGAGA 537
Query 536 agagtgag--aaa-aagaagaagaagaagaagaaaaagaGCAGCAATCATTCACCACCGG 592
||||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 538 GGAGTGAGAAAAAGAAGAAGAAGAAGAAGAAGAAAAAGAGCATCAATCATTCGCCACCGG 597
Query 593 TTTTAGTTGTCGAGGAACATGAGCTTCAGGATACTACGAA---TGTTGAACATGTGGAGG 649
|||||| ||| ||||| ||||||||||||| |||||| || |||||||| ||||||||
Sbjct 598 TTTTAGCTGTTGAGGACCATGAGCTTCAGGGTACTACCAATGTTGTTGAACCTGTGGAGG 657
Query 650 TGTCTTCCTCTTCACCAACTAAAGAAATGATGGAGGCTAAGAGACAAGAAAGCTCAGATA 709
||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 658 TGTCTTCTTCTTCACCAACTAAAGAAACGATGGAGTCTAAGAGACAAGAAAGCTCAGATA 717
Query 710 GTAGAAAACCTCATGAATTGACTGGTTTAGTTGGAGATAGAGCATCTGTTTCGGAGACTG 769
||||||||||||||||||||||| |||||||| | ||| | ||||||||| |
Sbjct 718 GTAGAAAACCTCATGAATTGACTTGTTTAGTT---G---GAG-A-----TTCGGAGACCG 765
Query 770 CCAATTCATCTAGTGTGCCAGATTATAATTCTTGTGTC-ACCaaaaaaaGAAAATTAAGT 828
| |||||||||||||||||||| |||||||||||| | |||||| ||||||||||||
Sbjct 766 CTAATTCATCTAGTGTGCCAGAGCATAATTCTTGTG-CTGTCAAAAAGAGAAAATTAAGT 824
Query 829 TCTGGAAGCATACCGGTTGCTGAAAATAGACAGTTAGCTGATGGGAATAGTTCTTGCAAA 888
||||||| || | | | || |||||||||||||||| ||||||||||| |
Sbjct 825 TCTGGAAACA-A------AC---AGAT--TCAGTTAGCTGATGGGAGTAGTTCTTGCAGA 872
Query 889 GTGGCTGAATCAAATATGCCTCAAACGACTGAGAGGTTGTCATCTAGGCATTATAGAGCG 948
||||||||||||||||||||| || | | |||| |||||||| | ||||||||
Sbjct 873 GTGGCTGAATCAAATATGCCT-------CT-A-ACGTTGACATCTAGGAACTATAGAGCA 923
Query 949 CAACCTATCAAAATACCGATATGGAGGGGATTGATGTCTGTTAAAGGAGGAAACAACTGT 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 924 CAACCTATCAAAATACCGATATGGAGGGGATTGATGTCTGTTAAAGGAGGAAACAGCTGT 983
Query 1009 ATCATGGATGGAATTGTTGCTCATGTATCAAGCTTAGCATGTCCTAAAGTCCATGAAACG 1068
| ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 984 ACCATGGATGGGATTGTTGCTCATGTATCAAGCTTAGCCTGCCCTAAAGTCCATGAAACG 1043
Query 1069 GCGAGTTCATTAAAGGG-CTGCCTCTCTGCTGAAGTACTTCCCAGGTTGGAAGTATGGCC 1127
|| |||||||||||||| | || ||||||||||| ||||||| |||||||||||||||||
Sbjct 1044 GCTAGTTCATTAAAGGGTCGGC-TCTCTGCTGAAATACTTCCTAGGTTGGAAGTATGGCC 1102
Query 1128 AAAAACCTTTCTT-AAGAATGGAGGACCTAAGGATGAAAGTATTGCTCTGTTTTTCTTCC 1186
||| |||||| || |||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 1103 AAAGACCTTT-TTGAAGAATGGAGGACCTAAGGATGAAAGCGTTGCCCTTTTTTTCTTCC 1161
Query 1187 CTTCCAGTGAAAGTAATGATGAAAAGGTTTTCAATTCCCTTGTTGATAAAATGAAGAAGA 1246
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1162 CTTCCAGTGAAAGTAATGATGAAAAGGTTTTTGATTCCCTTGTTGATAAAATGAAGAAGA 1221
Query 1247 ATGATTCTGCAATGAGATTTGTGCTTAATGATGCAGAACTTCTACTGTTCACCTCTTATA 1306
|||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1222 ATGATTCTGCGATGAGATGTGTGCTTAATGATGCAGAACTTCTACTCTTCACATCTTATA 1281
Query 1307 TGTTACCAAAGGATTCTTGGACT 1329
|||||||||||||||||||||||
Sbjct 1282 TGTTACCAAAGGATTCTTGGACT 1304
Score = 300 bits (162), Expect = 3e-80
Identities = 197/214 (92%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTTACATATCAAGGCACCTGTTTGTCAAACTTGTGGCGACATTGGTTTTGAAGAA 60
|||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 69 ATGTCTTTACATGTCAAGGGACCTGTTTGTCAAACTTGTGGCGACATAGGTTTTGAAGAA 128
Query 61 GCACTAGTCTTTTGTGACTCTTGTAAGATTGAGTCTATTCACCGCTATTG-TATAGGCAT 119
||||| ||||||||||||||||||| | |||||||||||||||||||||| | |||| ||
Sbjct 129 GCACTTGTCTTTTGTGACTCTTGTATGTTTGAGTCTATTCACCGCTATTGCT-TAGGGAT 187
Query 120 AACACCGACTCCTTTTACGGAATACATAACTTGGATTTGTGAGGACTGTGATGAGAGTGA 179
|||||||| |||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 188 AACACCGATTCCTTTTACGGAATACATAACTTGGATTTGTGAGGATTGTGATAACAGTGA 247
Query 180 CAGTGATTCTTATTGCAATGAAGATGATCAAACT 213
||||||||| |||||||||||| |||||| |||
Sbjct 248 GAGTGATTCTGATTGCAATGAAGTTGATCAGACT 281
> AT1G43765.1 | Symbols: | other RNA | chr1:16537511-16538091
FORWARD LENGTH=406
Length=406
Score = 337 bits (182), Expect = 2e-91
Identities = 230/252 (91%), Gaps = 7/252 (3%)
Strand=Plus/Plus
Query 21 ACCTGTTTGTCAAACTTGTGGCGACATTGGTTTTGAAGAAGCACTAGTCTTTTGTGACTC 80
|||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 55 ACCTGTTTGTGAAACTTGTGGCGACATAGGTTTTGAAGAAGCACTTGTCTTTTGTGACTC 114
Query 81 TTGTAAGATTGAGTCTATTCACCGCTATTGTATAGGCATAACACCGACTCCTTTTACGGA 140
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 115 TTGTAAGATTGAGTCTATACACCGCTATTGCATAGGCATAACACCGACTCCTTTTACGGA 174
Query 141 ATACATAACTTGGATTTGTGAGGACTGTGATGAGAGTGACAGTGATTCTTATTGCAATGA 200
||||||||||||||| |||||||| |||||||||||||||||||||||| |||| || ||
Sbjct 175 ATACATAACTTGGATCTGTGAGGATTGTGATGAGAGTGACAGTGATTCTGATTGTAAAGA 234
Query 201 AGATG-ATCAAACTCCTAAGCTTACACATATCTTgaagaagaa-gaagaagaaa-aagaa 257
| || |||| ||| ||||||||||||||||||||||||||| || || ||| |||||
Sbjct 235 AC-TGGATCAGACTGCTAAGCTTACACATATCTTGAAGAAGAGTGAC-AA-AAAGAAGAA 291
Query 258 gaagagga-gaa 268
|||||||| |||
Sbjct 292 GAAGAGGAAGAA 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5