BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913593
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43900.1 | Symbols: | Protein phosphatase 2C family protein... 1720 0.0
> AT1G43900.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:16654030-16655928 FORWARD LENGTH=1249
Length=1249
Score = 1720 bits (931), Expect = 0.0
Identities = 1071/1135 (94%), Gaps = 23/1135 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAAAATTAGAAATGTTGCTTCTTCTCCTATTGAATGTGTCCACCTCCGGACCAAA 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 16 ATGAAGAAAACTAGAAATGTTGCTTCTTCTCCTATTGAATGTGTCCACCTCCAGACCAAA 75
Query 61 --C-CCACCACTCTTGTTCGGtctttcttcttcttcttcttcaactcccaaacaatctct 117
| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 76 CCCACCACCACTCTTGTTCGGTCTTTCTTCTTCTTCCTCTTCAACTCTCAAACAATCTCT 135
Query 118 tcctttatcatcttctatctcttcctctgtttcttcttTTGGTTTTGCCAATCACAAAAC 177
||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 136 TCCTTTATCATCTTCTATCTCTTCCTCTGTTCCTTCTTCTGGTTTTGCCAATCACCAAAC 195
Query 178 CTGACAAACCCATCTCCTCCTCCGCTTCCTCCACTCTCCGTCGCTCCCCTTCGTGGGGAT 237
||||| ||||| | | ||||| | | |||| |||||||||||||||||||| ||||||
Sbjct 196 CTGACTAACCC-T-T-CTCCT-C-C-TCCT---CTCTCCGTCGCTCCCCTTCGCGGGGAT 246
Query 238 GCCAATTCGCCACCGCCGGAATCTTCTTCTTCTCCGGCGGCGAACTCTGATCATCCTAGT 297
|||||||| |||||||||||||||||||||||||||||| |||| ||| | || |
Sbjct 247 GCCAATTCTCCACCGCCGGAATCTTCTTCTTCTCCGGCGACGAA-----ATC-TTCT--T 298
Query 298 TCCATGATTTCTTCTAGAGATCCCGATGCTCTCTTTAGCGGCGGTGGAATCAGCTTTTTA 357
| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 299 T-AATGATTTCTTCTAGAGATCCCAATGCCCTCTTTAGCGGCGGTGGAATCAGCTTTTTA 357
Query 358 GCAGGAGTTAGAACTGTGAAGTTTAGTTATGGATATTCTAGTCTTAAGGGTAAAAGAGCA 417
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 358 GCAGGAGTTAGAACTGTGAAGTTTAGTTATGGTTATTCTAGTCTTAAAGGTAAAAGAGCA 417
Query 418 ACAATGGAGGATTACTTCGAAACTAGAATCTCTGATGTTAATGGACAAATGGTTGCTTTC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACAATGGAGGATTACTTCGAAACTAGAATCTCTGATGTTAATGGACAAATGGTTGCTTTC 477
Query 478 TTTGGTGTCTTCGATGGTCATGGTGGAGCAAGAACTGCTGAATATCTTAAAAACAATCTT 537
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 478 TTTGGTGTCTTTGATGGTCATGGTGGAGCAAGAACTGCAGAATATCTTAAAAACAATCTT 537
Query 538 TTCAAGAATTTAGTTAGTCATGATGATTTTATCTCAGACACTAAGAAAGCTATTGTTGAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTCAAGAATTTAGTTAGTCATGATGATTTTATCTCAGACACTAAGAAAGCTATTGTTGAA 597
Query 598 GTTTTTAAGCAGACAGATGAAGAGTATCTTATTGATGAGATAGGACAACCGAAGAATGCT 657
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 598 GTTTTTAAGCAGACAGATGAAGAGTATCTTATTGAAGAGGCAGGACAACCGAAGAATGCT 657
Query 658 GGCTCGACTGCTTCAACTGCTTTGCTTATAGGTGATAAGTTGATTGTTGCTAATGTCGGT 717
|||||||||||| | |||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 658 GGCTCGACTGCTGCGACTGCTTTTCTTATAGGTGATAAGTTGATTGTTGCTAACGTTGGT 717
Query 718 GATTCTAGAGTTGTAGCGTCGAA-AAATGGTTCAGCTGTTCCACTGTCTGATGATCATAA 776
|||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 718 GATTCTAGAGTTGTAGCGTC-AAGAAATGGTTCAGCTGTTCCACTCTCTGATGATCATAA 776
Query 777 ACCGGATAGATCAGATGAGCGACAACGGATTGAAGATGCTGGTGGCTTTATTATTTGGGC 836
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACCTGATAGATCAGATGAGCGACAACGGATTGAAGATGCTGGTGGCTTTATTATTTGGGC 836
Query 837 TGGAACATGGCGAGTTGGTGGAATTCTTGCGGTCTCTCGGGCATTTGGGGATAAGCAACT 896
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 837 TGGAACATGGCGAGTTGGTGGAATTCTTGCGGTCTCTCGGGCTTTTGGAGATAAGCAACT 896
Query 897 TAAACCATATGTGATTGCAGAGCCAGAAATTCAGGAGGAGGATATAAGCACGTTGGAGTT 956
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 897 TAAGCCATATGTGATTGCGGAGCCAGAAATTCAGGAGGAGGATATAAGCACATTGGAGTT 956
Query 957 TATTGTTATTGCTAGTGATGGACTGTGGAATGTGTTGTCAAACAAGGATGCCGTGGCAAT 1016
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TATTGTTGTTGCTAGTGATGGACTGTGGAATGTGTTGTCAAACAAGGATGCCGTGGCAAT 1016
Query 1017 AGCACGAGACATTTCAGATGCGGAAACAGCAGCAAGAAAGCTTGTGCAAGAAGCCTACGC 1076
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 AGTACGAGACATTTCAGATGCGGAAACAGCAGCAAGAAAGCTTGTGCAAGAAGGTTACGC 1076
Query 1077 TCGAGGTAGCTGCGACAATATCACTTGCATTGTTGTTCGATTCGAGGTTTCTTGA 1131
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1077 ACGGGGTAGCTGCGACAATATCACTTGCATTGTTGTACGATTCGAGGTTTCTTGA 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5