BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913614
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44090.1 | Symbols: ATGA20OX5, GA20OX5 | gibberellin 20-oxid... 1801 0.0
> AT1G44090.1 | Symbols: ATGA20OX5, GA20OX5 | gibberellin 20-oxidase
5 | chr1:16760677-16762486 REVERSE LENGTH=1158
Length=1158
Score = 1801 bits (975), Expect = 0.0
Identities = 1079/1131 (95%), Gaps = 0/1131 (0%)
Strand=Plus/Plus
Query 40 GTCTGCCCCTATTTAAATCCCTTCAAACTCAAAGGACCCAATTCAAGAGAAATGAATTCC 99
|||||||||||||||| ||||||||| | ||| ||||||| ||||||||||||||||||
Sbjct 28 GTCTGCCCCTATTTAACCCCCTTCAAAGTTAAAAGACCCAAGTCAAGAGAAATGAATTCC 87
Query 100 TCCGACGTCAACTTCTCCCTACTCCAAAACCAACCAAATGTTCCAGCTGAATTCTTCTGG 159
|||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct 88 TCCGACGTCAACTTCTCCCTACTCCAGAGCCAACCAAATGTTCCGGCTGAATTCTTCTGG 147
Query 160 CCGGAAAAAGACGTTGCCCCTTCAGAAGGCGACCTCGACCTCCCAATCATCGACTTGAGT 219
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 148 CCGGAGAAAGACGTTGCCCCTTCAGAAGGCGACCTCGATCTCCCAATCATCGACTTGAGT 207
Query 220 GGGTTCTTGAATGGCAATGAGGCCGAGACGCAACTTGCAGCTAAGGCAGTGAGAGAAGCG 279
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 208 GGGTTCTTGAATGGCAATGAGGCCGAGACGCAACTTGCAGCTAAGGCAGTGAAAAAAGCG 267
Query 280 TGCATGGCTCATGGTACGTTTCTAGTGGTCAATCATGGCTTCAAGTCGGGCTTGGCTGAA 339
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 TGCATGGCTCACGGTACTTTTCTAGTGGTCAATCATGGCTTCAAGTCGGGCTTGGCTGAA 327
Query 340 AAGGCGCTTGAGATATCGAGTTTGTTCTTTGGGCTATCCAAGGATGAGAAGCTAAAGGCT 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 328 AAGGCGCTTGAGATATCGAGTTTGTTCTTTGGGCTATCCAAGGATGAGAAGCTAAGGGCT 387
Query 400 TATAGGATCCCGGGGAATATCTCTGGCTATACCGCGGGTCATAGCCAGAGATTCTCCTCC 459
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 388 TATAGGATCCCGGGGAATATCTCTGGCTATACCGCAGGTCATAGCCAAAGATTTTCCTCC 447
Query 460 AATCTTCCATGGAATGAGACTTTGACTTTGGCATTCAAAAAAGGGCCACCCCATGTTGTT 519
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 448 AATCTTCCGTGGAATGAGACTTTGACTTTGGCCTTCAAAAAGGGGCCACCCCATGTTGTT 507
Query 520 GAGGAATTCCTAACCTCAAGGCTAGGCAACCATCGTCAAGAGATCGGTCAAGTGTTCCAA 579
|| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 508 GAAGACTTTCTAACCTCAAGGCTAGGCAACCATCGTCAAGAGATCGGTCAAGTGTTTCAA 567
Query 580 GAATTTTGTGATGCAATGAACGGATTGATTATGGATTTGATGAAGCTACTAGGAATAAGT 639
|||||||||||||||||||| ||| || |||||||||||||| ||||| | || ||||||
Sbjct 568 GAATTTTGTGATGCAATGAATGGACTGGTTATGGATTTGATGGAGCTATTGGGTATAAGT 627
Query 640 ATGGGTTTAAAAGACAGGAAATATTACCGGAGATTCTTCGAAGATGGAAGTGGCATCTTC 699
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 628 ATGGGTTTAAAAGACAGGACATACTACCGGAGATTCTTCGAAGATGGAAGTGGCATCTTC 687
Query 700 AGATGCAACTATTATCCGCCGTGCAAGCAGCCAGAGAAAGCCCTTGGTGTTGGTCCCCAT 759
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 688 AGATGCAACTATTATCCGCCGTGCAAGCAGCCAGAGAAAGCCCTTGGTGTTGGCCCCCAT 747
Query 760 AATGACCCAACGGCTATAACCGTTTTGCTTCAAGACGATGTTGTGGGCTTAGAGGTCTTT 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 AATGACCCAACGGCTATAACCGTTTTGCTTCAAGACGATGTTGTGGGCTTAGAGGTCTTT 807
Query 820 GCCGGAGGTAGGTGGCAGACCGTGCGGCCTCGTCCTGGTGCTCTTGTCGTCAACGTTGGA 879
|||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 808 GCCGCAGGTAGTTGGCAGACCGTTCGCCCTCGTCCTGGTGCTCTTGTCGTCAACGTTGGA 867
Query 880 GACACCTTCATGGCATTGTCAAATGGAAACTACAAGAGTTGTTACCATAGGGCAGTGGTA 939
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 868 GACACCTTCATGGCATTGTCAAATGGAAACTACAGGAGTTGTTACCACAGGGCAGTGGTA 927
Query 940 AACAAGGAGAAAGTGAGAAGGTCACTAGTGTTCTTCTCTTGTCCTAGAGAAGACAAGACC 999
|||||||||||||||||||||||| |||| ||||||||||||||||||||||| || | |
Sbjct 928 AACAAGGAGAAAGTGAGAAGGTCATTAGTATTCTTCTCTTGTCCTAGAGAAGATAAAATC 987
Query 1000 ATCGTACCTCCTCCTGAACTTGTTGAAGGCAAAGAAGCTTCTAGACAGTACCCTGACTTT 1059
||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 988 ATCGTACCTCCTCCTGAACTTGTGGAAGGTGAAGAAGCTTCTAGAAAGTACCCTGACTTT 1047
Query 1060 ACTTGGGCTCAGCTTCAGAAATTTACCCAGTCTGGCTATCGAGTCGATAACACCACTCTC 1119
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1048 ACTTGGGCTCAGCTTCAGAAATTTACCCAGTCCGGCTATCGAGTCGATAACACCACTCTC 1107
Query 1120 CATAACTTCTCTTCGTGGCTCGTCTCTAACTCCGACAAGAAATCAACTTGA 1170
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 CATAACTTCTCTTCGTGGCTCGTCTCTAACTCCGACAAGAAATCAACTTGA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5