BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913642
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44780.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone c... 1724 0.0
> AT1G44780.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone
chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G08310.1);
Has 18105 Blast hits to 11200 proteins in 808 species: Archae
- 37; Bacteria - 1195; Metazoa - 7724; Fungi - 1727; Plants
- 674; Viruses - 183; Other Eukaryotes - 6565 (source:
NCBI BLink). | chr1:16909708-16912270 FORWARD LENGTH=1647
Length=1647
Score = 1724 bits (933), Expect = 0.0
Identities = 1192/1314 (91%), Gaps = 29/1314 (2%)
Strand=Plus/Plus
Query 1 ATGGAGACGGAGGAGAGGAATCAGGATTCCGGTAAGAGTAATTCGAAGGACAATGATGCA 60
|||||||||| ||||| |||||| |||||||||||||||||| |||| || |||||||
Sbjct 46 ATGGAGACGGCGGAGATGAATCATAATTCCGGTAAGAGTAATTTGAAGAACGTTGATGCA 105
Query 61 ACAGAGAT-GAAGTTCAAGATTCTGGCGGCTTTGCGATCTCGCGTAACCTACCTCAGAAA 119
|| ||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 106 ACGGAGATCG-AGTTCAAGATTCTGGCGGCTTTGCGATCACGCGTAACCTACCTCAGAAA 164
Query 120 CAAAGCAGACTGCTTCACGATCGTGAGTGTGCGGAGGATGTTAGAGGAAGATATCGGATT 179
|||||||||||||||| | ||||||||| |||||||||||||||||||||| |||||
Sbjct 165 TGAAGCAGACTGCTTCACCTTGGTGAGTGTGAGGAGGATGTTAGAGGAAGATATTGGATT 224
Query 180 GGAGAAATTTGCTTTGGATGTGTATAAGAGCTTTGTTAAAGAGAAATTGGTTCAGTGTTT 239
|||||||| || ||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 225 GGAGAAATGTGATTTGGATGTGTATAAGAGCTTTGTTAAAGAGCATTTGGTTAAGTGTTT 284
Query 240 AGAAGAAGCTGGTGGTAATAATG--A--T--GAAAATTCTCAAGAAACTGAGAGGGAAGA 293
|||||||||| | || ||||||| | | || ||||||||||||||||||| | |
Sbjct 285 AGAAGAAGCT-G-GG-AATAATGATACTTCGGAGAATTCTCAAGAAACTGAGA--G--G- 336
Query 294 CGAAGACGATGTGATTCCAATC-AAAGAAGTTGTAGAACTATCTGAAGAGCATGAGGCGA 352
|||||||||| |||||||| | |||||||| | ||||| |||||||||||| || || |
Sbjct 337 -GAAGACGATGAGATTCCAA-CTAAAGAAGTAGCAGAACAATCTGAAGAGCACGA-GCCA 393
Query 353 A-GAACGATACTGGGGAAGAGAACACATTC-AAAAGGGTAGCTAAAGATATCAAGGACAA 410
| ||||||| |||| |||||||||||| || ||||||| |||||||||| | |||| |||
Sbjct 394 ATGAACGATGCTGGTGAAGAGAACACA-TCGAAAAGGGAAGCTAAAGATGTGAAGGGCAA 452
Query 411 GGGAAATAAAGAAGCCTTGCAGAGTGATATAAGGAGAGCCCTCCGGGAA-AGAACTTCGT 469
||||||||||||| || ||||||| ||||||| ||||||||| | |||| ||| |||| |
Sbjct 453 GGGAAATAAAGAAACCCTGCAGAGGGATATAAAGAGAGCCCTTC-GGAAGAGAGCTTCAT 511
Query 470 ATATTAAGGCTAATTCAGAGACAATTACAATTGCTTCACTTCGTCGACTTTTAGAGGAAG 529
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 512 ATATTAAGGCTAATTCAGAGACAATTACAATGGCTTCACTTCGTCGACTTCTAGAGGAAG 571
Query 530 ATCTTAAATTAGAGAAGGAGTCTCTTGATCCGTTCAAGAAGTTCATTAACAAAGAATTAG 589
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 572 ATCTTAAATTAGAGAAGGAGTCTCTTGATCTATTTAAGAAGTTCATTAACAAAGAATTGG 631
Query 590 ATGAAGTACTACAACTTCCTGAGGCTCCTAAACGTTCGACTGAGTCTATTGGGAAAAAAC 649
|||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||
Sbjct 632 ATGAAGTACTACAACTTCCTGATGCTCCTAAATGTTCGACTGAGTCTATTGTGAAAAATG 691
Query 650 TGAAGAAAAAGGTCAAGAGCACACTATCTAAGAAGGTAAGCAGTGAAGAAAATTCTGATT 709
|||||||||||||||||||||||| |||||||| ||||||||||||| | ||||||||||
Sbjct 692 TGAAGAAAAAGGTCAAGAGCACACCATCTAAGATGGTAAGCAGTGAATACAATTCTGATT 751
Query 710 CAGATGCGGAGGGGGCTGTGGACGACGAGGGA-GTAGCTGTAAAGAAGACAATGGCCCGA 768
||||| | |||||| ||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 752 CAGATACTGAGGGGAATGTGGACAACGA-GGAGGTAGCTGTAAAGAAGACAATGGCCCGA 810
Query 769 AAAGGAAAATTATCAAAACCAGAGATGATGGGAAAACGGAAAAGTGAAAATGGCAAACAT 828
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 811 AAAGTTAAATTATCAAAACCAGAGATGATGGGAAAACGGAAAAGTGAAAATGGTAAACAA 870
Query 829 GTATCTGGGAGAAAGAAAGCAAAACATACAGAAACAGATTCGGAGAATGACAGTGATGCA 888
|||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| ||
Sbjct 871 GTATCTGGAAGAAAGAAAGCAAAACATACAGAAATAGATTCAGAGAATGACAGTGATTCA 930
Query 889 GGAGATAGTGAAAAATCTTTGAAGCAGACAAAGGAGACTGCAACTGATGTGTATGGAAAG 948
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 931 GGGGATAGTGAAAAATCTTTGAAGCAGACTAAGGAGACTGCAACTGATGTGTATGGAAAG 990
Query 949 CGTGTTGAGCATCTCAAATCAGTCATCAAATCTTGTGGGATGAGTGTTCCTCCTAACATT 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 991 CGTGTTGAGCATCTCAAATCAGTCATCAAATCTTGTGGGATGAGTGTTCCTCCAAACATT 1050
Query 1009 TACAAGAAAGCCAAACAGGCTCCTGAAGAGAAACGTGAGGCTACGCTAATAGAAGAACTT 1068
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1051 TACAAGAAAGCCAAACAGGCTCCTCAAGAGAAACGTGAGGCTATGCTAATAGAAGAACTT 1110
Query 1069 GAGCAGATACTTTCCAAAGAAGGGCTGTCTTCAGATCCTTCAGAGAAAGAGATCAAAGAA 1128
|||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1111 GAGCAGATACTTGCCAAAGAAGGGCTGTCTTCAGATCCTTCAGCGCTAGAGATCAAAGAA 1170
Query 1129 GTAAAAAAGAGGAAGGGTATATCAAAAGAACTTGAGGGTATTGATACAAGTAACATTGTA 1188
||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||
Sbjct 1171 GTAAAAAAGAGGAAGAATATATCAAGAGAGCTTGAGGGTATTGATACAAACAACATTGTA 1230
Query 1189 TGGAGCTCAAGGAGAA-AGTCATCTACAAGTTTTACGCCTCCTCCAAAACCGAAAATAAC 1247
|||| ||||||||||| | || || |||||||| |||||||||||||||||||| ||||
Sbjct 1231 TGGAACTCAAGGAGAAGA-TCCTCCACAAGTTTCGCGCCTCCTCCAAAACCGAAAGTAAC 1289
Query 1248 AGCGGAAAGCGAGAGCGAGAATGATGAACCGGAAGATACTGAGAATGAAGAGGA 1301
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1290 AGCGGAAAGCGAGAGCGAGAGTGATGAACCGGAAGATTCTGAGAATGAAGAGGA 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69025749375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5