BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913669
Length=3480
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11250.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 719 0.0
AT1G65850.2 | Symbols: | Disease resistance protein (TIR-NBS-L... 302 2e-80
AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-L... 191 4e-47
> AT5G11250.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) | chr5:3587978-3591960 REVERSE LENGTH=3570
Length=3570
Score = 719 bits (389), Expect = 0.0
Identities = 1047/1350 (78%), Gaps = 104/1350 (8%)
Strand=Plus/Plus
Query 695 TTCTTGATGATGTGGA-TAGGTTAGGACAGCTAGATGCCTTGGCGAAAGAAACTCGTTGG 753
||||||||| ||| | | || || ||| |||||||| ||||||||||| || | |||
Sbjct 1040 TTCTTGATGGGGTGAACCA-GTCAGTACAACTAGATGCGATGGCGAAAGAAGCTTGGTGG 1098
Query 754 TTTGGTCCTGGGAGTCGAGTTATCATCACAACGGAAGATCGGAAAC-TTTTACAGGGACA 812
|||||||||||||||||| | ||||| ||||| |||||| ||||| ||||| | | |||
Sbjct 1099 TTTGGTCCTGGGAGTCGAATCATCATTACAACACAAGATCAGAAACTTTTTAGA-GCACA 1157
Query 813 TGGGATCAACCATATTTACAAAGTGGATTTTCCATCTACTGAGGAGGCTGTTCAAATATT 872
|||||| |||||||||||||| |||||||||||| | ||||| |||||| ||||||| ||
Sbjct 1158 TGGGATTAACCATATTTACAAGGTGGATTTTCCACCAACTGAAGAGGCTCTTCAAATCTT 1217
Query 873 TTGCATGAATGCTTTTGGTCAAAATTCCCCTAAAGATGGTTT-CGAGGGAC-TTGCTTGG 930
|||||| |||||||||||||||||||||||||||||||||| | || || ||||||||
Sbjct 1218 CTGCATGTATGCTTTTGGTCAAAATTCCCCTAAAGATGGTTTTC-AGA-ACCTTGCTTGG 1275
Query 931 GAAGTTGCAAATCTTGCCGGTGAACTTCCCTT-GGGACTAA-AGGTTATGGGCTCGTATT 988
|||| ||||||||||||| ||| |||||| ||| |||| | |||||||||| ||||
Sbjct 1276 AAAGTAATAAATCTTGCCGGT-AACCTCCCTTTGGGGCTAAGAA-TTATGGGCTCCTATT 1333
Query 989 TTCGGGGAATGTCCA-AGGAGGAGTGGAAAA-GTGCACTACCAAGGTTA-AGGACAAGCC 1045
|| |||||||||| | || || ||||||||| || || ||||||| ||| || | ||||
Sbjct 1334 TTAGGGGAATGTCGAGAGAAG-AGTGGAAAAAGT-CATTACCAAGATTAGAG-AGTAGCC 1390
Query 1046 TTGACGGAGAAAT-CGAGAGCATTATAAATTTCAGTTATGACGCCTT-GAGTGATAAAGA 1103
|||||| || || | | |||||| | || ||||| |||||||| || || ||| ||||
Sbjct 1391 TTGACGCTGATATTCAA-AGCATTTTGAAGTTCAGCTATGACGCTTTAGA-TGACGAAGA 1448
Query 1104 TAAAGAGTTGTTCCTTCATATAGCTTGCTTTTTCAACCATAAAGAAATGGAGAAAGTGGA 1163
|||| | || || ||||||||||| || ||||||||| |||||| || ||| | ||||
Sbjct 1449 TAAAAATTTATTTCTTCATATAGCATGTTTTTTCAACGGTAAAGAGATTAAGATATTGGA 1508
Query 1164 AGAACATCTTGCAAAGAAATTC-TCGTATTTGAAGCAAGGACTTCACGTATTAGCTGATA 1222
||| |||||||||||||| || | | | | | |||| ||||| |||| |||||||| |
Sbjct 1509 AGAGCATCTTGCAAAGAAGTTTGTGGAAGTC-AGGCAAAGACTTAACGTCTTAGCTGAGA 1567
Query 1223 AATCTCT--TAT-TTCTATCAACTCGACGTA-TATGGAAATGCATAA-CTTGTTAGCTCA 1277
||||||| ||| || || ||| | | | | ||| || |||||||| || | |||| |
Sbjct 1568 AATCTCTCATATCTTTTAGCAATTGGG-GAACTATAGAGATGCATAAACT-GCTAGCAAA 1625
Query 1278 ACTAGGTAGAGAAATTGTTTGTAGAC-AATCTATTAATGAGCCTGGACAACGTCAGTTTT 1336
||||||| ||||||||||| ||| || ||||||| |||||||||||||||| |||||||
Sbjct 1626 ACTAGGTGGAGAAATTGTTCGTA-ACCAATCTATCCATGAGCCTGGACAACGCCAGTTTT 1684
Query 1337 TGATTGATAGTAGA-GAGATTTGTGAAGTATTGACA-GATGATGCAACAGGTAGTAGAAA 1394
|| ||||| | ||| ||||| ||||| || ||| | | ||||||| ||||||||| |||
Sbjct 1685 TGTTTGATGG-AGAAGAGATATGTGATGTGCTGA-ATGGTGATGCAGCAGGTAGTA-AAA 1741
Query 1395 -TGTTATAGGCATAGAACTCAATTTTGGTGAGTCTGAGGACGAATTAAATAT-AAGTGAG 1452
||| ||||||||||| || | | | | || ||||| ||||| |||| || ||||
Sbjct 1742 GTGTAATAGGCATAGATTTCCACTACA-TAA-TC-GAGGAAGAATTCGATATGAA-TGAG 1797
Query 1453 AGAGGCTTTGGAGAAATGTCTAATCTACAATTCTTAAGAATCTATAGTGATCAT-ATAAA 1511
|||| |||| || |||||||||||| || ||||||||| || || |||| ||| ||| |
Sbjct 1798 AGAGTTTTTGAAGGAATGTCTAATCTTCAGTTCTTAAGATTCGATTGTGACCATGATACA 1857
Query 1512 TCCCGGCAAAATGTTTTTACCGCAAGGTTTGAACTATCTATCTCGTAAACTTC-G--ACT 1568
| | ||| | | | |||| ||| ||| |||||| ||||||||||||| | |||
Sbjct 1858 TT--G-CAA--T-TATC--CCGC--GGTCTGAGCTATCTTTCTCGTAAACTTCAGTTACT 1907
Query 1569 ATTGCATTGGAT-TCATTTTCCAATGACATGTTTCCCTTCTATTGTTAATCC-GGAGTTC 1626
| | ||||||| | ||||||| ||||||||||| ||||||| ||| || | |||||||
Sbjct 1908 A--G-ATTGGATAT-ATTTTCCGATGACATGTTTGCCTTCTACTGTGAA-CGTGGAGTTC 1962
Query 1627 CT-AGTCGAACTAGTCATGT-GTCATAGCAAGCTCGAGAAGTTGTGGGAGGGAATTAAAC 1684
|| | | |||||| | || | || |||||||| || | ||||||||| ||| ||||||
Sbjct 1963 CTTATT-GAACTAAACCTGACG-CACAGCAAGCTTGATATGTTGTGGGAAGGAGTTAAAC 2020
Query 1685 CGCTGCGA-AATCTTAAGTGGATGGATTTGAGTTCTTCTGTTAACTTGAAGGTGCTTCCT 1743
|||| | | ||||| | | |||||||||||||| |||||| |||||||||| |||||||
Sbjct 2021 CGCTTC-ATAATCTCAGGCAGATGGATTTGAGTTATTCTGTAAACTTGAAGGAGCTTCCT 2079
Query 1744 GATCTATCTACAGCCACTAATCTCAAAGAACTAGATTGTAGTT-T--TTGCTCAAGTTT- 1799
||||| || || |||| ||||||| | || | |||| | || | |||||| ||| |
Sbjct 2080 GATCTCTCAACTGCCATTAATCTCCGA-AAGTTGATTCT--TTCTAATTGCTCCAGTCTG 2136
Query 1800 AGTGGAGCTCCCTTTCTC-TATTGGGAATGCTATTAATCTCGAG-ATCTT-GAATCTCTA 1856
| | | ||||||| || |||||||||||| || ||||||||| || || || ||| ||
Sbjct 2137 A-TCAAACTCCCTT-CTTGTATTGGGAATGCCATCAATCTCGAGGAT-TTAGA-TCT-TA 2191
Query 1857 -TG-ATTGCTCAAATCTGGTTGAG-TTACCTTCTTCTATTGGAAATTTAATCAATAT-CA 1912
|| || |||||| ||| || ||| || ||| ||| | | || | | || || | ||
Sbjct 2192 ATGGAT-GCTCAAGTCTTGTGGAGCTTCCCT-CTT-T-TGGGGA-TGCCATTAACCTTCA 2246
Query 1913 AGAAATTTAACTTTCGTCG--AT-GTTCAAGTCTGGTGGAGCTCCCCTCCTCTGTTGGCA 1969
| ||||| ||| | ||| || | |||| |||||||||||||||||| ||| |||| |
Sbjct 2247 A-AAATTG--CTT-CTTCGCTATTGCTCAAATCTGGTGGAGCTCCCCTCTTCTATTGGGA 2302
Query 1970 AAGCCACCAAACT-CGAGGAATTGGAACTT 1998
| |||| || || || ||||||||| |||
Sbjct 2303 ATGCCATTAATCTTCG-GGAATTGGATCTT 2331
> AT1G65850.2 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:24494678-24498542 FORWARD LENGTH=3269
Length=3269
Score = 302 bits (163), Expect = 2e-80
Identities = 464/605 (77%), Gaps = 37/605 (6%)
Strand=Plus/Plus
Query 2328 ATGCTCAAGTTTGGTGGCA-ATCCCTTCCTCTATTGGAAAAGCCATTAATCTCAAGTATT 2386
||||||||||||||||| | |||| |||||||| |||||||||| ||||||| || |
Sbjct 2165 ATGCTCAAGTTTGGTGG-AGCTCCCATCCTCTATCGGAAAAGCCACTAATCTCCAGAAAC 2223
Query 2387 TGGAAT-TT-AGCGGATACTCAAGTCTT-GTGGAACTCCCCGCCTCAATTGGAAACCTTC 2443
| | || || | | | | | ||| || ||||| || ||| | || ||||| |||||||
Sbjct 2224 T-GTATCTTAATATG-TGCACGAGT-TTGGTGGAGCTGCCCTCTTCTATTGGGAACCTTC 2280
Query 2444 ATAAATTGTC-CTCCTTGACTTTGAATAGATGCTCAAAGTTGGAGGTTCTTCCCATC-AA 2501
|||| || | |||||||||||| ||||||||||| | ||||||||| ||| | ||
Sbjct 2281 ATAAGTT-ACAAAAATTGACTTTGAATGGATGCTCAAAGCTAGAGGTTCTT-CCAGCTAA 2338
Query 2502 CATCAACTTGCAATCTCTTGAGGCGCTT-ATTCTTACTGATTGCTCGTTGCTCAAAAGTT 2560
|||||||||| |||||||||| | ||| | ||| |||||||||| | || | ||||| |
Sbjct 2339 CATCAACTTGGAATCTCTTGATGAACTTGA-TCTCACTGATTGCTTGGTGTTGAAAAGAT 2397
Query 2561 TTCCTGAGATTTCTACAAACA-T-CAGCTATCTCGATCTCAGT-GGAACTGCAATAGAAG 2617
|||||||||| |||||||||| | || | |||| | ||| | ||||| ||||| |||
Sbjct 2398 TTCCTGAGATCTCTACAAACATTAAAG-T-TCTCAAGCTC-TTAAGAACTACAATAAAAG 2454
Query 2618 AAGTGCCTTTATCAA-TCAGCTTGTGGTCGCGTCTT-GAGACATT--ACATATGTCATAC 2673
|||| |||| |||| | || | ||| | |||||| | || || | || ||||||||
Sbjct 2455 AAGTCCCTTCGTCAATTAAG-TCATGGCCTCGTCTTCGCGA-TTTGGA-AT-TGTCATAC 2510
Query 2674 AGTGAGAACCTC-AAGAAATTCCCGCATGCTCTTGACATAATCACAGAC-CT-TCACTTG 2730
| | | |||||| ||| |||| |||||||||||| || ||||| ||| | | ||||
Sbjct 2511 AATCAAAACCTCAAAG-GATTCATGCATGCTCTTGATATCATCAC-GACGATGT-ACTTT 2567
Query 2731 AGCGATACAAAAATACAAGAAGTTGCTCCATGGGTCAAGAGAATCTCTCGTCTTC-GCCG 2789
| ||||| | |||| |||||| || || |||||||||| ||||||| | |||| | |
Sbjct 2568 AACGATATAGAAATGCAAGAAATTCCTTTGTGGGTCAAGAAAATCTCTAGGCTTCAGAC- 2626
Query 2790 ACTTGTACTTAAGGGATGCAACAAGCTCTTATCACTCCCACAGCTTCCGGATTCCTTATC 2849
|||| |||| || ||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 2627 ACTTATACTCAACGGATGTAAGAAGCTGGTATCACTCCCACAGCTTCCGGATTCCTTATC 2686
Query 2850 AGAACTAGACGCAGAAAATTGTGAATCTCTTGAAAGACTAGATTGCTCCTTTCTTGATCC 2909
| | ||| | | || ||| ||||| || || || ||||| |||||||| |||| | ||||
Sbjct 2687 ATACCTAAAGGTAGTAAACTGTGAGTCACTGGAGAGACTTGATTGCTCATTTCATAATCC 2746
Query 2910 ACAAG 2914
| |||
Sbjct 2747 A-AAG 2750
> AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-LRR
class), putative | chr3:9260838-9268797 REVERSE LENGTH=5946
Length=5946
Score = 191 bits (103), Expect = 4e-47
Identities = 166/196 (85%), Gaps = 5/196 (3%)
Strand=Plus/Plus
Query 468 GGATACTGAAGCAGTCATGGTCGGAAAAATCGCTACTGATATCTCTAACAAGTTGAATAA 527
||||| ||| || |||||| | | ||||||||| |||||||| || ||||||||||||||
Sbjct 4182 GGATAATGAGGCGGTCATGATTGAAAAAATCGCCACTGATATTTCAAACAAGTTGAATAA 4241
Query 528 TTCCACGCCATCTCGTGATTT-TATCGGTTTAATTGGGATGGGAGCTCATATGGAGAA-A 585
||||| |||||| | ||||| | || ||| |||||||||||||||||||||| ||
Sbjct 4242 GTCCACACCATCTAGGGATTTCGA-CGAATTAGTTGGGATGGGAGCTCATATGGA-AAGG 4299
Query 586 ATGAAACCGTTGTTATGCCTAGAGTCAGATGAAGTGAGGATGATAGGGATTTGGGGACCA 645
||| ||| |||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 4300 ATGGAACTATTGTTATGCCTAGACTCTGATGAAGTGAGGATGATAGGGATTTGGGGTCCG 4359
Query 646 TCTGGGATTGG-AAGA 660
||||||||||| ||||
Sbjct 4360 TCTGGGATTGGTAAGA 4375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 173226454179
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5