BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913687

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G45248.5 | Symbols:  | Nucleolar histone methyltransferase-r...   375    2e-103


> AT1G45248.5 | Symbols:  | Nucleolar histone methyltransferase-related 
protein | chr1:17162963-17164779 REVERSE LENGTH=797
Length=797

 Score =  375 bits (203),  Expect = 2e-103
 Identities = 242/261 (93%), Gaps = 1/261 (0%)
 Strand=Plus/Plus

Query  7    CCCAAAGGAAGAAAAAAGATTGGATTGAGGCGTCAGGATGCAGCACGAGACCGCATGAAA  66
            ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct  146  CCCAAAGGAAGAAAAAATATTGGATTGAGGCGTGAGGATGCAGCACGAGACCGCATGAAA  205

Query  67   GAGTTTGGATTTGATAAGCGTGTTATCAATGAGAGTATCAAGCAAGTGCTAAAGGTGTAT  126
            |||||||| ||| | |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  206  GAGTTTGGGTTTAAGAAGCCTGTTATCAATGCGAGTATCAAGCAAGTGCTAAAGGTGTAT  265

Query  127  GGTGAGGACCAATGGTTTCTGATTGAAGATGCTAACTATGATGCCCTCCTTAATATTTGC  186
            ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |
Sbjct  266  GGTGAGGACCAATGGTTTCTGATTGAAGATGCTAACTATGAGGTC-TCCTTAATATTTCC  324

Query  187  CTTGAAAAGAAAGAGGAACAAGACAACCAATTGGCGGCCGAGGAACACAAAGAAACAGCT  246
            ||| ||||| |||||||||||| | ||| ||||||||||||||||||| |||||||||||
Sbjct  325  CTTAAAAAGCAAGAGGAACAAGCCTACCGATTGGCGGCCGAGGAACACGAAGAAACAGCT  384

Query  247  CAGgaagaagaagaagaagaa  267
            |||||||||  ||||||||||
Sbjct  385  CAGGAAGAACCAGAAGAAGAA  405


 Score =  320 bits (173),  Expect = 8e-87
 Identities = 222/244 (91%), Gaps = 9/244 (4%)
 Strand=Plus/Plus

Query  306  AGTCATGGACTCATCACCACCAGCTTTTCAATTCGTAGAAG---CACCAGTAGATTTTGC  362
            ||||||||||||||||||| |||||||||||||||||||||   |||||||||||| |||
Sbjct  407  AGTCATGGACTCATCACCATCAGCTTTTCAATTCGTAGAAGCACCACCAGTAGATTATGC  466

Query  363  ACACCAGTCTGTTGGAGGTGCCCACAGTTCTCACTGTGGATGGCTAAGCAGTGAAGAGGA  422
            |||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct  467  ACACCATTCTGTTGGAGGTGCGCAGAGTTCTCACTGTGGATGGCTAAGCAGTGAGGAGGA  526

Query  423  GACAGATCCGGATGAGGATGAGGATAGTGATGAGATGATTGAGCTAACTCCAGAACCTCT  482
            |||||||||     | ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct  527  GACAGATCC-----A-GATAAGGATAGTGATGAGATGATTCAGCTAACTCCAGAACCTCT  580

Query  483  CTGTGAAGAACTTGAAGAGCTTCTTAGGGAAGTATATGGACAAAAGAAGATGAAGTACAA  542
            ||||||||||||||||||| |||| || |||||||||||||| |||||| ||||||||||
Sbjct  581  CTGTGAAGAACTTGAAGAGATTCTCAGAGAAGTATATGGACAGAAGAAGTTGAAGTACAA  640

Query  543  CTAA  546
            ||||
Sbjct  641  CTAA  644



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5