BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913701
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21790.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensi... 516 2e-145
AT1G50200.1 | Symbols: ALATS, ACD | Alanyl-tRNA synthetase | ch... 303 2e-81
> AT1G21790.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
domain containing protein | chr1:7654184-7655883 FORWARD
LENGTH=1232
Length=1232
Score = 516 bits (279), Expect = 2e-145
Identities = 318/337 (94%), Gaps = 2/337 (1%)
Strand=Plus/Plus
Query 846 GTGGGATATGCTTCAGTACCGGTTATACAGCGGCTTAATACCTTCCATTGTGGTTCACCA 905
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 569 GTGGGATATGCTTCAGTACCGGTTATACAGCGGCTTAATACCTTCTATTCTTGTTCACCA 628
Query 906 CCTCA-TCCTCCTCGTTTGCTTCACATTGGCTCTTTACCGAAATGTAACCATCAACTACC 964
|| | ||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 629 TCT-AGTCCTCCTTGTTTGCTTCACATTGGCACTATACCGAAATGTAACCATCAACTACC 687
Query 965 TGATTCTTACTCTCATTTGTGAGATGCATTCGATCTTTCTACACGTGAGGAAGCTAAGGA 1024
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 TTATTCTTACTCTCATCTGTGAGATGCATTCGATCTTTCTACACGTGAGGAAGCTAAGGA 747
Query 1025 GAATGGCGGGAATCCGAGACAGCAACACAGCATTGGTGAAACTAGAGTGGGTGCTAAACT 1084
||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 748 GAATGGCAGGAATCCGAGACAGCAACACAGCATTGGTGAAACTGGAGTGGGTATTAAACT 807
Query 1085 GGACAGCCTTTGTGTTTGCGAGGTGCATTCCTCACATTCTCATCACTGTCAAGCTGATCA 1144
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 808 GGACAGCCTTTGTGTTTGCGAGATGCATTCCTCACATTCTCATCACTATCAAGCTGATCA 867
Query 1145 AAGATGCACACAAGTTTGGGAAAGGCCTGGAGTTACC 1181
|||| ||||||||||||||||||||| ||||||||||
Sbjct 868 AAGACGCACACAAGTTTGGGAAAGGCGTGGAGTTACC 904
Score = 420 bits (227), Expect = 2e-116
Identities = 260/276 (94%), Gaps = 2/276 (1%)
Strand=Plus/Plus
Query 572 AGTTCTTTC-TAGCGACGCTGCTTCATTGGCTGGTCTCCGTCGTGTTTGAGATTGCTTTC 630
|||| |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 226 AGTT-TTTCTTAGCGACGCTGCTTCTTTGGCTTGTCTCCGTCGTGTTTGAGATTGCTTTC 284
Query 631 AATCTCCGGACGGAGCTTCTCTGGGTGATTTGCGGTGGTTGTTTCTTTCAATTGATGAAT 690
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 285 AATCTCCGGACGGAGCTTCTCTGGGTGATTTGCGGTGGATGCTTCTTTCAATTGATGAAT 344
Query 691 TGGGTGGTTCGTTCTTGGATTTATCGTGACCCTCTCTTTGTTAATACCTCTGTCTCGCTT 750
||||| |||||||| ||||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 345 TGGGTTGTTCGTTCATGGATTTCTCGTGACCCTATATTTGTTAATACCTCTGTCTCGCTT 404
Query 751 TTGCACTCAATTATCACCTCTGCATCAGTGGTTTTCATTCTGCTCAATCAATGCTTAGCC 810
||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 405 TTGCACTCAATCATCACCTCCGCATCAGTGGTTTTCATACTTCTCAATCAATGCTTAGCC 464
Query 811 AAAGGTTTAGACGAGATGTTCGATCATTCTGAGTTG 846
|||||||||||||||||||| |||||||||||||||
Sbjct 465 AAAGGTTTAGACGAGATGTTTGATCATTCTGAGTTG 500
> AT1G50200.1 | Symbols: ALATS, ACD | Alanyl-tRNA synthetase |
chr1:18591204-18598481 REVERSE LENGTH=3407
Length=3407
Score = 303 bits (164), Expect = 2e-81
Identities = 257/299 (86%), Gaps = 18/299 (6%)
Strand=Plus/Plus
Query 32 AGGTCTTTGGGTTACCAACTGATCGAATTTACTCTACCTATTTTGAG-GGTGATGTGAAA 90
|||||| |||| |||| ||||||||||| ||| |||| ||||||| | ||||||| ||||
Sbjct 703 AGGTCTATGGGCTACCGACTGATCGAATCTACGCTACATATTTTG-GCGGTGATGAGAAA 761
Query 91 GCTGGTCTTCAACCTGATAATGAAGCT-GGAGATATATGGCTT-AAATTTCTTCCATCTG 148
||||| ||||||||||||||||| ||| || ||||||||| || || ||||||||||||
Sbjct 762 GCTGGCCTTCAACCTGATAATGAGGCTAGG-GATATATGG-TTGAAGGTTCTTCCATCTG 819
Query 149 GACGAGTTATGCCCTTTGATTGCAAAGACAACTTCTGGGAAATGGGAGACACAGGTCCAT 208
|||| || |||| |||| |||||||||||| |||||||||||||| ||||||||||| |
Sbjct 820 GACGTGTGCTGCCATTTGGTTGCAAAGACAATTTCTGGGAAATGGGCGACACAGGTCCGT 879
Query 209 GTGGACCTTGTACTGAAATACATTATGATCG--T-G--A----TG---CTGCATCCTTAG 256
||||||||||||||||||||||||||||||| | | | || ||||||||||||
Sbjct 880 GTGGACCTTGTACTGAAATACATTATGATCGCATTGGTAACCGTGATGCTGCATCCTTAG 939
Query 257 TTAACAAGGATGATCCAACTTGCTTAGAAATATGGAATCTTGTCTTTATTCAGTTTAAC 315
||||||| || |||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 940 TTAACAATGACGATCCAACATGTTTAGAAATATGGAATCTTGTCTTTATTCAGTTCAAC 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5