BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913730
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47317.1 | Symbols: | Encodes a defensin-like (DEFL) family... 412 7e-115
AT1G47320.1 | Symbols: | transposable element gene | chr1:1734... 235 2e-61
> AT1G47317.1 | Symbols: | Encodes a defensin-like (DEFL) family
protein. | chr1:17347094-17347515 FORWARD LENGTH=312
Length=312
Score = 412 bits (223), Expect = 7e-115
Identities = 284/313 (91%), Gaps = 6/313 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACATTGAAAACAACAATCTTCATCATCTTTGTTCTCTATATCTCATGTACATTG 60
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1 ATGGCGACATTGAAAACAACAATCTTTATCATCTTCATTCTCTATATCTCATGTACAATG 60
Query 61 TTTGCGAATATCTTTGGAGTTCAAGCCGATGCATCATGCTTGACAA-AAAGAGAGTGTGA 119
|||| ||||||||| |||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 61 TTTGTAAATATCTTTAGAGTTCAAGCCGATGCATCATGCTTGACAACAAA-AGAGTGTGT 119
Query 120 GAG-GCGATGTTCCGATGACGAGGCACAGTGTATTCGTGGAC-AGTGCCAATGTCCGCAC 177
| | ||| ||||| || || || ||||||||||||| ||| | ||||||| |||||||||
Sbjct 120 G-GTGCGTTGTTCAGACGAAGATGCACAGTGTATTCATGG-CGAGTGCCATTGTCCGCAC 177
Query 178 CTAAAAGTCGAGATTGAGCCGACCAAGGCGATACGATGCAAGACCGATCGTGATTGTCCT 237
||||||||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 178 CTAAAAGTCGACATTGAGCCGACCAAGGCGATACGGTGCAAGACTGATCTTGATTGTCCT 237
Query 238 GATTCTCATCAATGCCCTAAAGATTATTATTATGCATGCCTTAATAATGGAGAATGTACT 297
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 238 GATCCTCATCAATGCCCTAAATATGATTATTATGCATGCCTTAATAATGGAGAATGTACT 297
Query 298 TGTATCTCTATTT 310
||||||||| |||
Sbjct 298 TGTATCTCTGTTT 310
> AT1G47320.1 | Symbols: | transposable element gene | chr1:17349099-17350163
FORWARD LENGTH=780
Length=780
Score = 235 bits (127), Expect = 2e-61
Identities = 247/302 (82%), Gaps = 20/302 (7%)
Strand=Plus/Plus
Query 1 ATGGCGACATTGAAAACAACAATCTTCATCATCTTT-GTTCTCTATATCTCATGTACATT 59
||| || |||||| || |||||||| |||||| ||| ||| ||||| |||||||||| ||
Sbjct 1 ATGACGGCATTGAGAAGAACAATCTCCATCAT-TTTCGTTTTCTATCTCTCATGTACGTT 59
Query 60 GTTTGCGAATATCTTTGGAGTTCAAGCCGATG-CA-TCATGCTTGACAAAAAG-AGAGTG 116
||| | |||||||||||||||||||||| | | | | |||| ||| | | | ||| ||
Sbjct 60 GTTCGTGAATATCTTTGGAGTTCAAGCC-A-GAAATTTATGCAAGAC-AGATGAAGATTG 116
Query 117 TGAGAGGCGATGTTCCGATGA-CGA-G-GC-ACAGTGTATTCGTGG-ACAGTGCCAATGT 171
|| | |||||| | | | || | | | || | | ||||||| ||| | | ||||| |||
Sbjct 117 TGTGTTGCGATG-T-C-AAGATCCAGGTGCGA-ACTGTATTCTTGGAATA-TGCCATTGT 171
Query 172 CCGCACCTAA-AAGTCGAGATTGAGCCGACCAAGGCGATACGATGCAAGACCGATCGTGA 230
||| || || |||| |||| ||||| |||||||| |||| |||||||||| ||||||||
Sbjct 172 TCGCGCC-AACAAGTTGAGACTGAGCTGACCAAGGTGATAAGATGCAAGACTGATCGTGA 230
Query 231 TTGTCCTGATTCTCATCAATGCCCTAAAGATTATTATTATGCATGCCTTAATAATGGAGA 290
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 231 TTGTCCTGATTCTCATCAATGCCCTAAAGATTATTATTATGCTTGCCTTAATAATGGAGA 290
Query 291 AT 292
||
Sbjct 291 AT 292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14477111712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5