BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913737
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 739 0.0
> AT3G61360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22704304-22706138 REVERSE LENGTH=1835
Length=1835
Score = 739 bits (400), Expect = 0.0
Identities = 470/504 (93%), Gaps = 4/504 (1%)
Strand=Plus/Plus
Query 123 TGGTGCAATCAAGGTGATGAAGGAGATGGAAGAGAATGGAATTGAGCCTGACAGTGTAAC 182
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1008 TGGTGCAATTAAGGTGATGAAGGAGATGGAAGAGAAAGGAATTGAGCCTGACAGTGTAAC 1067
Query 183 TTTCCACTCGATGTTTATCGGAATGATGAAATCGAAAGAGTTTGGATTCAACGGGGTATG 242
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1068 TTTCCACTCGATGTTTATCGGAATGATGAAATCAAAAGAGTTTGGATTCAATGGGGTATG 1127
Query 243 TGAGTATTACCACAAAATGAAGGAAAGATGTCTGGTTCCAAAAACACCAACGGTAGTGAT 302
|||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct 1128 TGAGTATTACCAGAAAATGAAGGAAAGATCTCTGGTTCCGAAAACACCAACTATAGTGAT 1187
Query 303 GCTGATGAAGCTGTTCTGTCAGAACGGTGAAGTCAACTTGGGATTAGACCTTTGGAAGTA 362
||||||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||
Sbjct 1188 GCTGATGAAGCTGTTCTGTCACAACGGTGAAGTAAATTTAGGATTAGACCTGTGGAAGTA 1247
Query 363 TATGTTGGAGAGAGGGTATTGCCCTCATGGCCAAGCATTGGAACTACTTACCACTGCACT 422
||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 1248 TATGTTGGAGAAAGGGTATTGCCCTCATGGCCACGCATTGGAACTCCTTACCACTGCTTT 1307
Query 423 GTGTGCTCGAAGAAGAGGCAATGATGCATTTGAGTGCTCGA-GGCAAACAGTGGAGAGAG 481
||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||||
Sbjct 1308 GTGTGCTCGAAGAAGAGCCAATGATGCATTTGAGTGCTC-ATGGCAAACAGTAGAGAGAG 1366
Query 482 GAAGGTGCGTTAGCGAACCAGTCTATCGGATGTTAGAGACCTCATTATCAAGTAACAACG 541
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1367 GAAGGTGTGTGAGCGAACCAGTCTATCGGATGTTAGAGACCTCATTATCAAGCAACAACG 1426
Query 542 AGTTGAAGAAACTAGAAGAACTCAAGG-GAAAGATACAAAAACTTCATAGCTTTTTGCCA 600
||||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||
Sbjct 1427 AGTTGAAGAAACTAGAAGAACTCAAGGAGGA-GATACAAAAACTGCATAGCTTTTTGCCT 1485
Query 601 CCTCCTGGAACACAGCTAATCTAG 624
||||||| || ||||||||| |||
Sbjct 1486 CCTCCTGAAATACAGCTAATGTAG 1509
Score = 159 bits (86), Expect = 2e-38
Identities = 92/95 (97%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 26 ATATGGATCGTCGAGATTTTGATATCACGGTACAGATACTCACTACATTGATCCATGGGT 85
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 ATATGGATCGTCTAGATTTTGATATCACGGTACAGATACTCACTACATTGATCCATGGGT 880
Query 86 CTGGTGTAGCTCGGAACAAGATCAAAACACGCCAA 120
||||||||||| |||||||||||||| ||||||||
Sbjct 881 CTGGTGTAGCTAGGAACAAGATCAAAGCACGCCAA 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5