BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913750
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47410.1 | Symbols: | unknown protein; Has 26 Blast hits to... 773 0.0
> AT1G47410.1 | Symbols: | unknown protein; Has 26 Blast hits
to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:17394765-17395673 FORWARD
LENGTH=788
Length=788
Score = 773 bits (418), Expect = 0.0
Identities = 532/585 (91%), Gaps = 15/585 (3%)
Strand=Plus/Plus
Query 1 ATGGTATTCTGCGGCGATGACGTGGCCACAGGGGTGAAAGATGCTTTCATTTATTGTTAC 60
|||||||| ||||| || ||||| ||||||||||||| ||||||| ||| ||||||||||
Sbjct 54 ATGGTATTTTGCGGTGACGACGTTGCCACAGGGGTGAGAGATGCTATCACTTATTGTTAC 113
Query 61 AGATGCAAAGGCAGAAAAGTTACAGTTTCCGATCACGAAGACAACGATGACAACAAGCCT 120
|||||||||||||||||||||||| |||| |||||||||| | | ||||| |||||||||
Sbjct 114 AGATGCAAAGGCAGAAAAGTTACACTTTCTGATCACGAAGCCGATGATGATAACAAGCCT 173
Query 121 ATCGGGGATTTTGACTACGACCATGAAGTTGTTGTTTTCGAGATCAGAAGTCGGGCAATG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 174 ATCGGGGATTTTGACTACGACCATGAAGTTGTTGTTTTCGAGATCAGAAGTCGGGCGATG 233
Query 181 GAGAAGCTAAGGAAGAAGAGAAAGACAGGAATAGATGGGCTAACTTGCAAATTCATGAAA 240
|| || |||||||||||| ||| ||||||||| || |||||||||| ||||||| | |||
Sbjct 234 GAAAAACTAAGGAAGAAGCGAAGGACAGGAATGGAGGGGCTAACTTACAAATTCGTAAAA 293
Query 241 GAATATGACATCGAAAAGGAAGAGGGTAACGAATTCTGTTCGGTAAGAAGCAGTTTTTCG 300
|||||||||||| | | | |||||||||||||||||||||||||||||||||
Sbjct 294 GAATATGACATC------G-A-A----AACGAATTCTGTTCGGTAAGAAGCAGTTTTTCG 341
Query 301 GAATGTTGCATGAGTGATATGAGCATAGAAGGATACATGACGGCGAAAACGGAGTTCTCG 360
|||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 342 GAATGTTGCATGAGTGATATCAGCATAGAAGGATACATGACAGCGAAAACTGAGTTCTCA 401
Query 361 AGGAGTTCGAGCTTGAATGGTTTAGAGCTGGAGAATCAATGGAAGATATATTACGTGAAT 420
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 402 AGGAGTTCAAGCTTGAAAGGTTTAGAGCTGGAGAATCAATGGAAGATGCATTACGTTAAT 461
Query 421 GAAATCAGGAAAGGATCAGTGATTCAAGAGTTCTGTCATTGCCAAGGATGGCCATTTGGT 480
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GAAATTAAGAAAGGATCAGTGATTCAAGAGTTCTGTCATTGCCAAGGATGGCCATTTGGA 521
Query 481 TTGGGGCGAAAAGCTGCGTTGCTTCCACCGCTTCCAAAGTCACCTGCAGAGTCATGGTCT 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TTGGGACGAAAAGCTGCGTTGCTTCCACCGCTTCCAAAGTCACCTGCAGAGTCATGGTCT 581
Query 541 TGGAGGAAGCCTACTACAAGAGTTACTCCAATTCCATTTGTTTGA 585
|||||||||||||| | | ||||||||||| |||| |||||||||
Sbjct 582 TGGAGGAAGCCTAC-A-A-GAGTTACTCCAGTTCCTTTTGTTTGA 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5