BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913766
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47590.1 | Symbols: ATPUP20 | Member of a family of proteins... 1692 0.0
AT1G47603.1 | Symbols: ATPUP19, PUP19 | purine permease 19 | ch... 1312 0.0
> AT1G47590.1 | Symbols: ATPUP20 | Member of a family of proteins
related to PUP1, a purine transporter. May be involved in
the transport of purine and purine derivatives such as cytokinins,
across the plasma membrane. | chr1:17486691-17487863
REVERSE LENGTH=1173
Length=1173
Score = 1692 bits (916), Expect = 0.0
Identities = 1068/1141 (94%), Gaps = 11/1141 (1%)
Strand=Plus/Plus
Query 37 CAAGAAGAAGAAGCTAATATTGGAGTTGAGAATCAACCAAGAGCAACAACTTCAATAGC- 95
||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 40 CAAGAAGAAGAAGCTAATATTGGAGTTAAGAATCAACCAAGAGCAACGACATCAATAGCT 99
Query 96 TCTTGATCGGTCACAAAATCTTAAGACAAGAAACTGGTGGATTTGTATCTTTGTCTGCTC 155
|| |||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||
Sbjct 100 TC-TGATCGGTCACAAATTCTCAAGACACGAAACTGGTGGATTTGTATCTTTGTCTGCTC 158
Query 156 TGGTTTGGTCGTAACAGGACGTGTTTTATCAACACTTCTTCTAAACTTCTATTTCAACCA 215
|||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||| |||
Sbjct 159 TGGTTTTGTCGTAACAGGACGTGTTTTATCAACACTTCTTTTAAACTACTACTTCATCCA 218
Query 216 AACAGGAAGAGATGCTTGTGACGATCCAAAACAATTTAAAGGCACATGGCTTCAATCTTT 275
||||||| | |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 219 AACAGGACGTGATGCTTGTGACGATCCAAAACAATTTAAAGGAACCTGGCTTCAATCTTT 278
Query 276 TGTCCAAAACGCTGCGTTTCCATCTATAGCCTTCATT-TTCCTCTTATGGCGTTCTTCAT 334
| |||||||||||||||||||||||||||||||| || || ||||| |||||||||| ||
Sbjct 279 TCTCCAAAACGCTGCGTTTCCATCTATAGCCTTCCTTCTT-CTCTTGTGGCGTTCTTTAT 337
Query 335 TCTCCACTCATAGAGAAACTCAATCTTCGTCTTCtttttttGGCAAACTCTTTATTCTTT 394
||||||||||| ||||||||||||| | ||||||| |||||| ||||||||| ||||||
Sbjct 338 TCTCCACTCATGGAGAAACTCAATC-T--TCTTCTTCTTTTGGAAAACTCTTTCTTCTTT 394
Query 395 ACCTCTCTCTCGGTTTCCTCTCTGCGGCTTATAGCCAACTCTATGCAATTGGGAGAACTC 454
|| ||||||||||| |||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 395 ACATCTCTCTCGGTGTCCTCTTTTCGGCTTATAGCCAACTCTACGCAATTGGGAGAACTC 454
Query 455 ATTGTGTGTTCTTCTTTTGGATCTTCACAACACAACTGATCTTCACTTCCATCTTTACAG 514
||||||||||||||||||||||||| || |||||| |||||||||||||||| |||||||
Sbjct 455 ATTGTGTGTTCTTCTTTTGGATCTTTACTACACAATTGATCTTCACTTCCATATTTACAG 514
Query 515 CAATTATCAACAAACACAAATTCAACCGTTGGATCATATTATCCATCGTCCTTTCTGGAG 574
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 CGATTATTAACAAACACAAATTCAACCGTTGGATCATATTATCCATCGTCCTTTCTGGAG 574
Query 575 TTGCCACGGGCATTACATCTTCGGATGACGCCTATTATCCCTGCGAAAGTGAAGGCTGGA 634
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 575 TTGCTACGGGCATTACATCTTCGGATGATGCCTATTATCCCTGCGAAAGTGAAGGATGGA 634
Query 635 AAATGAGCTACGGTGCTTGGTGT-GCCTTCTTTGGCACGGTAGCCTTCTCTTTATCTCTA 693
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 635 AAATGAGCTACGGTGCTTGGTGTAG-CTTCTTTGGCACGGTAGCCTTCTCTTTATCTCTA 693
Query 694 TGTATCATGCAATTGGGGTTCCAAAAGGTCATACCTAACACAGAGAGTAGAGTTTCCACG 753
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct 694 TGTATCATGCAATTAGGGTTCCAAAAGGTTATACCTAAGACAGAGAGTAGAGTTTCCGCG 753
Query 754 GTGATGTTGATGCAAACCAATGCTTCTATGATTGCAACATTGATATGTTTGGTTGGATTA 813
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 754 GTGATGTTGATGCAAACCAATGCTTCTATGATTGCAACGTTGATATGTTTGGTTGGATTG 813
Query 814 TTCATAAGCAGTGAATACAAAGATATAAAAGAAGATTTCGAGACGTTTAAGAA-GGGGAA 872
|| ||||| |||| | ||||||||| || |||||||||||||||||||| || ||||||
Sbjct 814 TTTGTAAGCGGTGAGTTCAAAGATATCAAGGAAGATTTCGAGACGTTTAA-AACGGGGAA 872
Query 873 GCCACTTTACGTTTTGAGTCTCATCGGATTATCACTTGCATGGCATGTAATGTCTTTAGG 932
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 873 GCCACTTTACGTTTTGAGTCTTATCGGATTATCACTTGCATGGCAAGTAATGTCTTTAGG 932
Query 933 ACTTGTGGGTCTTGTGTGTTTGGCTTCTTCTATTTTCTCTAATGTTGTCAACTTCTCCGC 992
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 933 GCTTGTGGGTCTTGTGTGTTTGGCTTCTTCCCTTTTCTCTAATGTTGTCAGCTTCTCCGC 992
Query 993 CACACCTTTAGCGAACATTTTTGTTGTTTTGGCGTTTCGGTTTATGGATGACGACATTGA 1052
|||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 993 GACACCTGTAGCGAACATTTTCGTTGTGTTGGCGTTTCGGTTTATGGATGACGACATTGG 1052
Query 1053 ATGGTTTAAGGGAGGAGCTCTGTTAGCTGGGATCCTTGGGCTTGCATCTTATGTATATTC 1112
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1053 ATGGTTTAAGGGAGGAGCTCTGTTAGCTGGGATCCTTGGGTTTGCATCTTATGTATATTC 1112
Query 1113 CTTGTACAAGGCTATTAAGAAACAGGAAATAGCAAGCCAAACTGAATTAGTAAGAGTATG 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CTTGTACAAGGCTATTAAGAAACAGGAAATAGCAAGCCAAACTGAATTAGTAAGAGTATG 1172
Query 1173 A 1173
|
Sbjct 1173 A 1173
> AT1G47603.1 | Symbols: ATPUP19, PUP19 | purine permease 19 |
chr1:17496839-17498110 REVERSE LENGTH=1182
Length=1182
Score = 1312 bits (710), Expect = 0.0
Identities = 1023/1172 (87%), Gaps = 29/1172 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTTACACATC-GAATCTCCGGACCGAATAA--CA-CAAGAAGAAGAAGCTAATAT 56
|||||||| |||| | |||| ||||||||| ||| || ||||||||||||| |||||
Sbjct 1 ATGGGTTTCCACA-CAAAATCGCCGGACCGAGTAACTCATGAAGAAGAAGAAGCAAATAT 59
Query 57 TGGAGTTGAGAATCAACCAAGAGCAACAACTTCAATAGCTCTTGATCGGTCACAAAATCT 116
|||||||| ||||||||||||| ||| || |||| | ||||| || ||||||||| | |
Sbjct 60 AGGAGTTGATAATCAACCAAGAGAAACGACATCAACATCTCTTAATAGGTCACAAATTAT 119
Query 117 TAAGACAAGAAACTGGTGGATTTGTATCTTTGTCTGCTC-TGGTTTGGTCGTAACAGGAC 175
||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 120 TAAGACAAGAAACTGGTGGATTTGTATCTTTGTCTGCTCGTG-TTTGGTCGTAGCAGGAC 178
Query 176 GTGTTTTATCAACACTTCTTCTAAACTTCTATTTCAACCAAACAGGAAGAGATGCTTGTG 235
|||||||||| || |||||| |||||||||| |||| |||||||||| |||||| |||||
Sbjct 179 GTGTTTTATCCACCCTTCTTTTAAACTTCTACTTCATCCAAACAGGACGAGATGTTTGTG 238
Query 236 ACGATCCAAAACAATTTAAAGGCACATGGCTTCAATCTTTTGTCCAAAACGCTGCGTTTC 295
| || ||||| |||||||||||||||||||| || ||| | |||||||||||||||||||
Sbjct 239 ATGACCCAAAGCAATTTAAAGGCACATGGCTCCAGTCTATGGTCCAAAACGCTGCGTTTC 298
Query 296 CATCTATAGCCTT-CATT-TTCCTCTTATGGCGTTCTTCATTCTCCACTCATAGAGAAAC 353
| | || |||||| | || ||| ||||||||||||||||||| ||||| ||||| |||||
Sbjct 299 CTTTTACAGCCTTTC-TTCTTC-TCTTATGGCGTTCTTCATTTTCCACCCATAGTGAAAC 356
Query 354 T-CAATCTTCGTCTTCtttttttGGCAAACTCTTTATTCTTTACCTCTCTCTCGGTTTCC 412
| | ||||| ||||||| |||||||||||||||| |||||||| |||||||||| |||
Sbjct 357 TTCC-TCTTCTTCTTCTTCTTTTGGCAAACTCTTTCTTCTTTACATCTCTCTCGGCGTCC 415
Query 413 TCTCTGCGGCTTATAGCCAACTCTATGCAATTGGGAGAACTCATTGTGTGTTCTTCTTTT 472
| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
Sbjct 416 TATTTGCGGCTTATAGCCAACTCTATGCAATTGGGCGAACGCATTGTGTGTTCTTCTTGT 475
Query 473 GGATCTTCACAACACAACTGATCTTCACTTCCATCTTTACAGCAATTATCAACAAACACA 532
||||||| || | ||| |||| ||||||||||| |||||| |||||||||||||||| |
Sbjct 476 GGATCTTTACTTCCCAATTGATTTTCACTTCCATATTTACAACAATTATCAACAAACAAA 535
Query 533 AATTCAACCGTTGGATCATATTATCCATCGTCCTTTCTGGAGTTGCCAC-GG----G-CA 586
|||||||||||||||||||||||||||| ||||||||||||| |||||| || | ||
Sbjct 536 AATTCAACCGTTGGATCATATTATCCATGGTCCTTTCTGGAGCTGCCACAGGCTTAGGCA 595
Query 587 TTACATCTTC-GGATGACGCCTATTAT-CCCTGCGAAAGTGAAGGCTGGAAAATGAGCTA 644
|||||||||| || || ||||||| || |||||||||| |||||||| |||||||| ||
Sbjct 596 TTACATCTTCAGG-TGGCGCCTAT-ATTCCCTGCGAAAATGAAGGCTCAAAAATGAG-TA 652
Query 645 -CGGTGCTTGGTGTGCCTTCTTTGGCACGGTAGCCTTCTCTTTATCTCTATGTATCATGC 703
||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 653 ACGGCGCTTGGTGTGCCTTCTTTGGCACGGTAGCATTCTCTTTATCTTTATGTATCATGC 712
Query 704 AATTGGGGTTCCAAAAGGTCATACCTAAC-ACAGAGAGTAGAGTTTCCACGGTGATGT-T 761
|||| |||||||||||||||||||| | | ||| |||||||||||||| ||||||| | |
Sbjct 713 AATTAGGGTTCCAAAAGGTCATACCGA-CTACACAGAGTAGAGTTTCCGCGGTGAT-TCT 770
Query 762 GATGCAAACCAATGCTTCTATGATTGCAACATTGATATGTTTGGTTGGATTATTCATAAG 821
||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 771 AATGCAAACCAATGCTTCTATGATTGCAACGTTGATATGTTTGGTTGGATTATTCGTTAG 830
Query 822 CAGTGAATACAAAGATATAAAAGAAGATTTCGAGACGTTTAAGAAGGGGAAGCCACTTTA 881
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 831 TGGTGAATTCAAAGATATAAAAGAAGATTTTGAGACGTTTAAGAAGGGGAAGCCACTTTA 890
Query 882 CGTTTTGAGTCTCATCGGATTATCACTTGCATGGCATGTAATGTCTTTAGGACTTGTGGG 941
|| |||||||| || |||||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 891 TGTCTTGAGTCTAATTGGATTATCGCTTGCGTGGCAAGTAATGTCTTTAGGGCTTGTGGG 950
Query 942 TCTTGTGTGTTTGGCTTCTTCTATTTTCTCTAATGTTGTCAACTTCTCCGCCACACCTTT 1001
|| |||||||||||||||||| |||||||||||||||||| ||||| | | || || ||
Sbjct 951 GCTAGTGTGTTTGGCTTCTTCTCTTTTCTCTAATGTTGTCAGCTTCTGCTCAACGCCATT 1010
Query 1002 AGCGAACATTTTTGTTGTTTTGGCGTTTCGGTTTATGGATGACGACATTGAATGGTTTAA 1061
|| |||||| | |||| |||||||||||||||| ||||| |||| || ||| |||||
Sbjct 1011 AGTAAACATTCTCCTTGTGTTGGCGTTTCGGTTTACGGATGCCGACGTTAAATTTTTTAA 1070
Query 1062 GGGAGGAGCTCTGTTAGCTGGGATCCTTGGGCTTGCATCTTATGTATATTCCTTGTACAA 1121
|| |||||||||| |||||||||| ||||| ||||||||||||| ||||||||||| ||
Sbjct 1071 GGAAGGAGCTCTGGTAGCTGGGATTCTTGGTTTTGCATCTTATGTGTATTCCTTGTATAA 1130
Query 1122 GGCTATTAAGAAACAGGAAATAGCAAGCCAAA 1153
| ||| |||||| ||||||||||||||||||
Sbjct 1131 GTCTACCAAGAAAAAGGAAATAGCAAGCCAAA 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5