BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913770
Length=405
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47470.1 | Symbols: | Protein of unknown function (DUF784) ... 388 2e-107
AT3G11990.1 | Symbols: | Protein of unknown function (DUF784) ... 381 3e-105
AT1G45190.1 | Symbols: DD18 | downregulated in DIF1 18 | chr1:1... 361 4e-99
AT2G04031.1 | Symbols: | Protein of unknown function (DUF784) ... 255 2e-67
AT2G04037.1 | Symbols: | Protein of unknown function (DUF784) ... 202 2e-51
AT2G04041.1 | Symbols: | Protein of unknown function (DUF784) ... 196 1e-49
> AT1G47470.1 | Symbols: | Protein of unknown function (DUF784)
| chr1:17414611-17415132 REVERSE LENGTH=522
Length=522
Score = 388 bits (210), Expect = 2e-107
Identities = 298/340 (88%), Gaps = 8/340 (2%)
Strand=Plus/Plus
Query 70 TCACCCGCAATAGAATATGACATGGAGATTTCTCACCATTACTCACACAAACAGCTCGAT 129
||||||||||| |||||||| | |||| || ||||||||||||| || ||||||||||||
Sbjct 187 TCACCCGCAATGGAATATGATAGGGAGCTTGCTCACCATTACTCGCATAAACAGCTCGAT 246
Query 130 TTCCTTGAGGCTTGCGCTGACAAGCCGAGCACAAAATGCGGAAATGAGGTTTTCAAGAAC 189
|| |||||||||||| |||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct 247 TTTCTTGAGGCTTGCTCTGAAAAGCCAAGCTCAAAATGCGGAAATGAGGTTTTCAAGAAC 306
Query 190 ATGTTGGATGAGAC-GACGCCAATTACAGATGCATGTTGTCGTGATATATTGAAGATGGG 248
||||| |||||||| | |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 307 ATGTTAGATGAGACAGT-GCCAATTACAGATGAATGTTGTCGTGATATATTGAAGATCGG 365
Query 249 AAAAGATTGCCATCTTGGATTGGTTCAAA-TCATATTCGCCACGTATGAGTTTAAGAATT 307
||||||||||||||| ||||||||| ||| ||||||||||||| ||||||| ||| |||
Sbjct 366 AAAAGATTGCCATCTCGGATTGGTT-AAACTCATATTCGCCACATATGAGTATAAAAATA 424
Query 308 TTTCATCTAAGGGTATTCCGAAA-AGTAAACAAACATGGAATGATTGTGTCCGTAGAGTT 366
||||||| || ||||| ||| || |||||||||||||| || |||||| ||||||
Sbjct 425 AAGCATCTAAAGGCATTCC-AAAGAGCAAACAAACATGGAACGAATGTGTCTTTAGAGTA 483
Query 367 GGGAACAAGATTGGTGCTCCGGAT-TCTTTTGAGCAGTAA 405
|||| ||||||||||||||||| | |||||||| ||||||
Sbjct 484 GGGAGCAAGATTGGTGCTCCGG-TCTCTTTTGAACAGTAA 522
> AT3G11990.1 | Symbols: | Protein of unknown function (DUF784)
| chr3:3817294-3817946 FORWARD LENGTH=653
Length=653
Score = 381 bits (206), Expect = 3e-105
Identities = 292/333 (88%), Gaps = 8/333 (2%)
Strand=Plus/Plus
Query 70 TCACCCGCAATAGAATATGACATGGAGATTTCTCACCATTACTCACACAAACAGCTCGA- 128
||||| ||||| ||||||||||||||| || |||||||||| || ||||||||||| |
Sbjct 238 TCACCAGCAATGGAATATGACATGGAGCTTGCTCACCATTATTCGGACAAACAGCTCAAG 297
Query 129 TTTCCTTGAGGCTTGCGCTGACAAGCCGAGCACAAAATGCGGAAATGAGGTTTTCAAGAA 188
||| |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 298 TTT-CTTGAGGCTTGCTCTGAAAAGCCGAGTTCAAAATGCGGAAATGAGGTTTTCAAGAA 356
Query 189 CATGTTGGATGAGACGACGCCAATTACAGATGCATGTTGTCGTGATATATTGAAGATGGG 248
|||||| ||||||||| || ||||||||| | |||||||||||||||||||||||||||
Sbjct 357 CATGTTAAATGAGACGATGCTAATTACAGAGGAATGTTGTCGTGATATATTGAAGATGGG 416
Query 249 AAAAGATTGCCATCTTGGATTGGTTCAAA-TCATATTCGCCACGTATGAGTTTAAGAATT 307
|||||||||||||| ||||||||| ||| ||||||| ||||| ||||||| ||| |||
Sbjct 417 CAAAGATTGCCATCTAGGATTGGTT-AAACTCATATTTGCCACATATGAGTATAAAAATA 475
Query 308 TTTCATCTAAGGGTATTCCGAAA-AGTAAACAAACATGGAATGATTGTGTCCGTAGAGTT 366
|| |||||||||| ||||| ||| || |||||||||||||| || ||||||| ||||||
Sbjct 476 TTGCATCTAAGGGCATTCC-AAAGAGCAAACAAACATGGAACGAATGTGTCCATAGAGTG 534
Query 367 GGGAACAAGATTGGTGCTCCGGAT-TCTTTTGA 398
|||| ||||||||||||||||| | ||||||||
Sbjct 535 GGGAGCAAGATTGGTGCTCCGG-TCTCTTTTGA 566
> AT1G45190.1 | Symbols: DD18 | downregulated in DIF1 18 | chr1:17104351-17105004
FORWARD LENGTH=654
Length=654
Score = 361 bits (195), Expect = 4e-99
Identities = 293/340 (86%), Gaps = 8/340 (2%)
Strand=Plus/Plus
Query 70 TCACCCGCAATAGAATATGACATGGAGATTTCTCACCATTACTCACACAAACAGCTCGA- 128
||||||||||| |||||||| | |||| || ||||||||||||| ||||||||||| |
Sbjct 239 TCACCCGCAATGGAATATGATAGGGAGCTTGCTCACCATTACTCGGACAAACAGCTCAAG 298
Query 129 TTTCCTTGAGGCTTGCGCTGACAAGCCGAGCACAAAATGCGGAAATGAGGTTTTCAAGAA 188
||| |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 299 TTT-CTTGAGGCTTGCTCTGAAAAGCCGAGTTCAAAATGCGGAAATGAGGTTTTCAAGAA 357
Query 189 CATGTTGGATGAGACGACGCCAATTACAGATGCATGTTGTCGTGATATATTGAAGATGGG 248
|||||| ||||||| | ||||||||| || | |||||||||||||||||||||||||||
Sbjct 358 CATGTTAAATGAGACAATGCCAATTACGGAGGAATGTTGTCGTGATATATTGAAGATGGG 417
Query 249 AAAAGATTGCCATCTTGGATTGGTTCAAA-TCATATTCGCCACGTATGAGTTTAAGAATT 307
|||||||||||||| ||||||||| ||| ||||||| ||||| ||||||| ||| |||
Sbjct 418 CAAAGATTGCCATCTAGGATTGGTT-AAACTCATATTTGCCACATATGAGTATAAAAATA 476
Query 308 TTTCATCTAAGGGTATTCCGAAA-AGTAAACAAACATGGAATGATTGTGTCCGTAGAGTT 366
|| |||||||||| ||||| ||| || |||||| |||||||||| ||| | ||||||||
Sbjct 477 TTGCATCTAAGGGCATTCC-AAAGAGCAAACAAGCATGGAATGAATGTATTCGTAGAGTA 535
Query 367 GGGAACAAGATTGGTGCTCCGGAT-TCTTTTGAGCAGTAA 405
|| | ||||||||||||||| | | |||||||| || |||
Sbjct 536 GGTAGCAAGATTGGTGCTCCAG-TCTCTTTTGAACAATAA 574
> AT2G04031.1 | Symbols: | Protein of unknown function (DUF784)
| chr2:1304160-1304779 REVERSE LENGTH=620
Length=620
Score = 255 bits (138), Expect = 2e-67
Identities = 222/262 (85%), Gaps = 8/262 (3%)
Strand=Plus/Plus
Query 138 GGCTTGCGCTGACAAGCCGAGCACAAAATGCGGA-AATGAGGTTTTCAAGAACATGTTGG 196
||||||| || | |||||||| | |||||| || ||||| ||||||| ||||||||||
Sbjct 189 GGCTTGCCCTAAAAAGCCGAGTTCCAAATGC-GATGATGAGATTTTCAATAACATGTTGG 247
Query 197 ATGAGACGACGCCAATTACAGATGCATGTTGTCGTGATATATTGAAGA-TGGGAAAAGAT 255
||| |||||||||| | ||| ||| |||||||| |||||||||||||| | || ||||||
Sbjct 248 ATGGGACGACGCCAGTGACAAATGAATGTTGTCATGATATATTGAAGACT-GGCAAAGAT 306
Query 256 TGCCATCTTGGATTGGTTCAAATCATATTCGCCACGTATGAGTT-TAAGAATTTTTCATC 314
|| || |||| ||||||| ||||||||||| ||||| |||| || ||| || || ||||
Sbjct 307 TGTCACCTTGCATTGGTTAAAATCATATTCTCCACGAATGA-TTATAAAAAAATTGCATC 365
Query 315 TAAGGGTATTCCGAAAAGTAAACAAACATGGAATGATTGTGTCCGTAGAGTTGGGAACAA 374
||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 366 TAAGGCTATTCCAAAAAGTAAACAGACATGGAATGATTGTGTCCGTAGAGTTGGGATGGA 425
Query 375 GATTGGTGCTCCGGAT-TCTTT 395
|||||||||||||| | |||||
Sbjct 426 GATTGGTGCTCCGG-TCTCTTT 446
> AT2G04037.1 | Symbols: | Protein of unknown function (DUF784)
| chr2:1305663-1306136 REVERSE LENGTH=474
Length=474
Score = 202 bits (109), Expect = 2e-51
Identities = 225/278 (81%), Gaps = 20/278 (7%)
Strand=Plus/Plus
Query 138 GGCTTG-CGCTGACAAGCCGAGCACAAAATGCGGA-AATGAGGTTTTCAAGAACATGTTG 195
|||||| | || | |||||||| | ||||| || ||||| ||||| |||||||||||
Sbjct 207 GGCTTGTC-CTAAAAAGCCGAGTTCCAAATG-TGATGATGAGATTTTCCAGAACATGTTG 264
Query 196 GATGAG-ACGACGCCAATTACAGATGCATGTTGTCGTGATATATTGAAGA-TGGGAAAAG 253
|||| | ||||| ||| | ||| | | |||||||| ||||||| |||||| | || ||||
Sbjct 265 GATG-GTACGACACCAGTAACAAACGAATGTTGTCTTGATATACTGAAGACT-GGCAAAG 322
Query 254 ATTGCCATCTTGGATTGGTTCAAATCATATTCGCCACGTATGAGTT-TAAGAATTTTTCA 312
| || ||||||| ||||||| |||| |||||| ||||| |||| || ||| ||| || ||
Sbjct 323 ACTGTCATCTTGCATTGGTTAAAATTATATTCTCCACGGATGA-TTATAAAAATATTGCA 381
Query 313 TCTAAG-GGTATTCCGAAAAGTAAACAAACATGGAATGATTGTG-TCCGTAGAGTTGGG- 369
||| || | |||||| |||||||||||||||||||||||||||| || ||||||| | |
Sbjct 382 TCT-AGAGCTATTCCAAAAAGTAAACAAACATGGAATGATTGTGCTC-GTAGAGT-GAGC 438
Query 370 AACA-AGATTGGTGCTCCGGAT-TCTTTTGAGCAGTAA 405
|| | |||||||||||||| || ||||| || ||||||
Sbjct 439 AA-AGAGATTGGTGCTCCG-ATCTCTTTCGAACAGTAA 474
> AT2G04041.1 | Symbols: | Protein of unknown function (DUF784)
| chr2:1308089-1308544 REVERSE LENGTH=456
Length=456
Score = 196 bits (106), Expect = 1e-49
Identities = 221/275 (80%), Gaps = 14/275 (5%)
Strand=Plus/Plus
Query 138 GGCTTGCGCTGACAAGCCGAGCACAAAATGCGGA-AATGAGGTTTTCAAGAACATGTTGG 196
||||||| || | |||||||| | ||||| || ||||| ||||||| |||||| |||
Sbjct 189 GGCTTGCCCTAAAAAGCCGAGTTCCAAATG-TGATGATGAGATTTTCAATAACATGATGG 247
Query 197 ATGAGACGACGCCAATTAC-AGATGCATGTTGTCGTGATATATTGAAGA-TGGGAAAAGA 254
||| |||||| ||| | || || || ||||||||||||||||||||||| | || |||||
Sbjct 248 ATGGGACGACACCAGTGACAAG-TGAATGTTGTCGTGATATATTGAAGACT-GGTAAAGA 305
Query 255 TTGCCATCTTGGATTGGTTCAAATCATATTCGCCACGTATGAGTTTAAGAA-TTTTTCAT 313
||| ||||||| ||||||| |||| ||||| ||||| ||| || ||| || | |||
Sbjct 306 TTGTCATCTTGCATTGGTTAAAATTGTATTCTCCACGGATGGGTATAA-AAGTAAAGCAT 364
Query 314 CTAAG-GGTATTCCGAAAAGTAAACAAACATGGAATGATTGTGTCCGTAGAGTTGGGAAC 372
| || | ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 365 C-CAGAGCAATTCCAAAAAGTAAACAGACATGGAATGATTGTGTCCGTAGAGTTGGGATG 423
Query 373 AAGATTGGTGCTCCGGATT-CTTTTGA-GCAGTAA 405
|||||||||| |||| | ||||||| ||| |||
Sbjct 424 GAGATTGGTGCCCCGG-TCACTTTTGAAGCA-TAA 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19152012369
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5