BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913777

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24230.6 | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4...   226    1e-58


> AT4G24230.6 | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4:12566935-12568754 
REVERSE LENGTH=1288
Length=1288

 Score =  226 bits (122),  Expect = 1e-58
 Identities = 155/170 (91%), Gaps = 6/170 (4%)
 Strand=Plus/Plus

Query  132  GAAAAGGAAAGAAGGTGGTAGAGATGTCGTAGTCGCTGAATCTGAGGAGCTTAGGA-TTG  190
            ||||| | ||||| ||||| |||||||| |||||||||||||||||||| ||| || |||
Sbjct  523  GAAAACG-AAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGAGGAGGTTA-GAGTTG  580

Query  191  AAGAGAGTAGTAATACGGTGGAGGAGAGTGAAACTGAAGCAGAGAATGAAGAGAAAACAG  250
            || |||||||||||| |||||||||||||||  |||||||||||||||||||||||||||
Sbjct  581  AAAAGAGTAGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAATGAAGAGAAAACAG  640

Query  251  AGTTGACTATTGAAGAAGACGATGATGATTGGGAAGGAATTGAGAGGAGT  300
            |||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct  641  AGTTGACTATTGAAGAAGA---TGATGATTGGGAAGGAATTGAGAGGAGT  687



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5