BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913798
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47810.1 | Symbols: | F-box and associated interaction doma... 459 3e-128
AT1G47800.1 | Symbols: | F-box and associated interaction doma... 200 2e-50
> AT1G47810.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:17603504-17604559 FORWARD LENGTH=1056
Length=1056
Score = 459 bits (248), Expect = 3e-128
Identities = 296/319 (93%), Gaps = 3/319 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGAGACGAAGAAGAATCTGCAATCTCTGGATCATCCAATTCCCATTGACATGTTG 60
|||||||| ||| |||||| | |||||||||||| |||||||||| ||||| |||||
Sbjct 1 ATGGCAGATACGGAGAAGAGTTTGCAATCTCTGG---ATCCAATTCCTGTTGACGTGTTG 57
Query 61 TTCGAGATCTTCTTAAACTTGCCCGCGAAATCTTTAGCCAGGTTTGTTTGCGTATCGAAG 120
||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 58 TTCGAGATCTTCTTAAACTTGCCAGCGAAATTTTTAGCCAGGTTTGTTTGTGTATCGAAG 117
Query 121 CTATGGGCCAAAATCATCCGCAATCAAGATTTCATCAGATCCTTCTCGCTTCGATCATCC 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 118 TTATGGGCCAAAATCATCCGCAATCAAGATTTCATCAGATCCTTCTCGTTTCGATCATTC 177
Query 181 CTAAAGAATAAGCAGCACCGCCTCCTCTTTGCTTTCAAAAACCAAATAAAAGGTTATCAA 240
| | |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 178 CGAGAGAATAAGCAACACCGTCTCCTTTTTGCTTTCAAAAACCAAATAAAAGGTTATCAA 237
Query 241 GAAAATTGGTACTTTTTCTCCAAATCAACTCATGTTTCAACTCCACTATTTGAGCCAAAC 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 238 GAAAATTGGTACTTTTTCTCCAAATCAACTCATGTTTCAACTCCACTATATGAGCCAAAC 297
Query 301 TTACTGGTTTTACCGGACC 319
| |||||||||||||||||
Sbjct 298 TCACTGGTTTTACCGGACC 316
Score = 449 bits (243), Expect = 2e-125
Identities = 263/273 (96%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 351 CCAAAACATTAACGAATTTGAAGCTCTAGTTGGGGAGGAACCACCTGATTTTGAATCAAG 410
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 CCAAAACATTAACAAATTTGAAGCTCTAGTTGGGGAGGAACCACCTGATTTTGAATCAAG 374
Query 411 TACGGTGTGTCATTTGAAGCAAATGCGATACCAAAAGCCTAGCTACGTCCATGGGTTGAT 470
|||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 375 TACGGTGTGTCACTTGAAGAAAATGCGATACCAAAATCCTAGCTACGTCCATGGGTTGAT 434
Query 471 TAGCTTTTTATATGGGAAAGAACAAATCATATGTAATCCTAGCATAGGTAAGTCCATAAA 530
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 435 TAGCTTTTTATATGGGGAAGAACAAATCATATGTAATCCCAGCATAGGTAAGTCCATAAA 494
Query 531 CTTACCCACTTTGGAATCCAGTGAAACGATCATTGGAAGCTTTTTAGGATATGATCCAAT 590
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 495 CTTACCCACTTTGGGATCCAGTGAAACGATCATTGGAAGCTTTTTAGGATATGATCCTAT 554
Query 591 CCATGCACAATATAAAGTATTGTGTTTGACCAA 623
||||||||||||||||||||| ||||||| |||
Sbjct 555 CCATGCACAATATAAAGTATTATGTTTGAACAA 587
Score = 250 bits (135), Expect = 2e-65
Identities = 195/224 (87%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 630 AATGATCCAATGCAGCAGTCCTCACTATCCTGGAACCATCTCTGTGTGCATAGACGGTGT 689
||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 651 AATGATCCAATGCCCCACTCCTCACTATCCTGGAACCACCTCTGTGTGCATAGACGGTGT 710
Query 690 TTTATATTACAGTGCTTCTAGTAG-TTTTACCATGGATGAACCATTATTCTTGGTGAGAT 748
|||||||||||||||||| || || |||||||||| ||||||||||| |||||||||||
Sbjct 711 TTTATATTACAGTGCTTCCAG-AGGTTTTACCATGCATGAACCATTAAACTTGGTGAGAT 769
Query 749 TTGGTTTGAGGTCTGAAAGTTTGGAAGTTGCTTCCAAATTTCCCGAGGGCCTTGAATCAT 808
||| ||||||| |||||||||||||| ||||||| ||||||||||| | || |||| |
Sbjct 770 TTGATTTGAGGACTGAAAGTTTGGAAATTGCTTCTGTATTTCCCGAGGACTTTAAATCGT 829
Query 809 CAAATCGAAT-TACTTTGATAAACTACCATGGAAAAGTAGCTGT 851
| | || || |||||||||||||| |||||||||||||||
Sbjct 830 CGGTTA-AACCTAGTTTGATAAACTACCGTGGAAAAGTAGCTGT 872
> AT1G47800.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:17601513-17602676 FORWARD LENGTH=1164
Length=1164
Score = 200 bits (108), Expect = 2e-50
Identities = 189/225 (84%), Gaps = 18/225 (8%)
Strand=Plus/Plus
Query 630 AATGATCCAATGCAGCAGTCCTCACTATCCT-G-GAACCATCTCTGTGTGCATAGACGGT 687
||||||||||||||||| |||||||||| | | ||| |||| | |||||||||| ||
Sbjct 705 AATGATCCAATGCAGCACTCCTCACTATTGTGGCGAAAAATCT-T-TGTGCATAGATGGC 762
Query 688 GTTTTATATTACAGTGC-TTCTAGTAGTTTTACCATGGATGAACCATTATTCTTGGTGAG 746
|||||||||||||||| ||| | |||||||| | || | | ||||||||||
Sbjct 763 ATTTTATATTACAGTGCTTTC-ACTAGTTTTA-C-------AA-C---AGTCTTGGTGAG 809
Query 747 ATTTGGTTTGAGGTCTGAAAGTTTGGAAGTTGCTTCCAAATTTCCCGAGGGCCTTGAATC 806
||||| | ||||| ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 810 ATTTGATGTGAGGGCTGAAAGTTTGGAAGTTGCATCCAAATTTCCCGAGGGCCTTAAATC 869
Query 807 ATCAAATCGAATTACTTTGATAAACTACCATGGAAAAGTAGCTGT 851
|| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 870 GTCGAATGGAATTACTTTGATAAACTACCATGGAAAAGTAGCTGT 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5