BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913807
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47860.1 | Symbols: | transposable element gene | chr1:1762... 1037 0.0
AT1G75710.1 | Symbols: | C2H2-like zinc finger protein | chr1:... 327 1e-88
> AT1G47860.1 | Symbols: | transposable element gene | chr1:17620677-17630270
REVERSE LENGTH=9594
Length=9594
Score = 1037 bits (561), Expect = 0.0
Identities = 625/657 (95%), Gaps = 0/657 (0%)
Strand=Plus/Plus
Query 613 GTGTCAGAGTTAGGGCCAGAGGATTCAGGGAGAAACATAGTGGACATCATCTTCAAATCT 672
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 GTGTCGGAGTTGGGGCCAGAGGATTCAGGGAGAAACATAGTGGACATCATCTTCAAATCT 1897
Query 673 AGCTGGTTACGTAAAGACAGTCCCATCTATAAGATCGAACGGATATTAAAAGTCCACAAC 732
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1898 AGCTGGTTACGTAAAGACAGTCCCATCTACAAGATCGAACGGATATTAAAAGTCCACAAC 1957
Query 733 ACTCAACGCACGATCCAACGGTTCGAAGATTGTCGTGACGCAGTCAAATCCCATGCACAT 792
|||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1958 ACTCAACGAACGATCCAACGGTTTGAAGATTGTCGCGACGCAGTCAAGTCCCATGCACAT 2017
Query 793 GCCTCCACCAGAAAAGAGCCACGATCTGCCGCCGACGGCAACGAGCTTCTTTGCTTCCAC 852
||||| |||||||||||| | || || ||||||||||||||||||||||| ||||||||
Sbjct 2018 GCCTCTACCAGAAAAGAGGCTCGGTCCGCCGCCGACGGCAACGAGCTTCTCCGCTTCCAC 2077
Query 853 TGCACCACCGTTTCTTGCTCCCTCGGCTCATGCGGTTCGACCTCCATTTGCTCGGCCATC 912
|||||||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||||
Sbjct 2078 TGCACCACAGTTTCTTGCTCCCTCGGCTCACGCGGCTCGACCTCCATTTGCTCCGCCATC 2137
Query 913 CCTGGCTGCCGTGTTTGCACCATTATCCGCCACGGCTTCCACGCCAAAACGGTACGTGTA 972
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2138 CCTGGCTGCCGCGTTTGCACCATTATCCGCCATGGCTTCCACGCCAAAACGGTACGTGTA 2197
Query 973 GGCACCGGCGAAGGAAAAGAGGAGATCAAGGGCGTGAGGACCACTGCAAGCAGTGGAAGA 1032
|||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2198 GGCAATGGTGAAGGAAAAGAGGAGATTAAGGGCGTGAGGACCACTGCAAGCAGTGGAAGA 2257
Query 1033 GCACACGACGCGTTGAGGTGTTTTGACCAGCGGAGGGCGATGCTTGTCTGCCGCGTGATC 1092
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 2258 GCACACGATGCGTTGAGGTGTTTTGACCAGCGGAGGGCGATGCTTGTTTGCCGTGTGATC 2317
Query 1093 GCGGGAAGAGTGAGGCGCGTGCAGAGTGATGTTCCGGAAGATGAAAGTGGTTCTGGCTCG 1152
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2318 GCGGGAAGAGTGAGGCGCGTGCAGAGTGATGTGCCGGAAGATGAAAGTGGTTCTGGCTCG 2377
Query 1153 TATGATTCGGTTGCGGGGGCCGCTGGGGTCTACACAAGCCTCGACGACTTGGTTGTGTAT 1212
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 2378 TATGATTCGGTTGCGGGGGCCGCTGGGGTCTACACAAACCTTGACGACTTGGTTGTGTAT 2437
Query 1213 AATCCAAAAGCTATTCTTCCTTGCTTTGTGGTTATCTACAAAGTCTCCGAGCCTTAA 1269
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2438 AATCCAAAAGCTATACTTCCTTGCTTTGTAGTTATCTACAAAGTCTCCGAGCCTTAA 2494
Score = 726 bits (393), Expect = 0.0
Identities = 480/519 (92%), Gaps = 17/519 (3%)
Strand=Plus/Plus
Query 1 ATGGCTCCTCTCCCTTTCATACCGGAACAAACCCATTCGCAAACGCGTTTATCTTCAGAC 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGCTCCTCTCCCTTTCATACCGGAACAAACCCGTTCGCAAACGCGTTTATCTTCAGAC 60
Query 61 ACAAAGAAGAAGAACAGAAACAAGAAAACGTCCCAACCGCCGCCTCAAACGCAAACGCTA 120
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 61 ACAAAGAAGAAGAACAGAAACAAGAAAACGTCCCAACCACCGCCT------CAAACGC-A 113
Query 121 AAGCAGAAGCAAAAGCAGAAGACTGTACCAACATCATCTTCATCGTCGTCATGGAGCCAG 180
|| || | |||||||||||| |||||| || |||| |||||||||||||||||||||
Sbjct 114 AA--AG-A--TAAAGCAGAAGACGGTACCATCAACATCATCATCGTCGTCATGGAGCCAG 168
Query 181 ATAAAGAACCTTTTGAGTTGCAAACAAATCGAAGGGCCACGAGTGCACGAACCATCAAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 ATAAAGAACCTTTTGAGTTGCAAACAAATCGAAGGGCCACGAGTGCACGAACCATCAAAG 228
Query 241 ATTACTTCATCATCTTGTGGCTCTTCTCTTTGTAAGTTTAGCGATGTTGTTTACGGTAAT 300
||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 229 ATTACGTCATCATCTTGTGGCTCCTCTCTTTGTAAGTTTAGTGATGTTATTTACGGTAAT 288
Query 301 GCTCGCGTGATTCACCGCTCCGATCACTCGCCC-GAGAGTAGCAATCTTGGTCAAGATGC 359
|| || ||||||||||||||||||||||| ||| ||||||||||||||||| |||||| |
Sbjct 289 GCCCGTGTGATTCACCGCTCCGATCACTC-CCCTGAGAGTAGCAATCTTGGACAAGATAC 347
Query 360 CCGGTTGTTGACCCGAAAACCCGTCACT-C--GTGGATCTTCTTCGTCGGTTAGATCCAA 416
|||||||||||||||||||||| | | | | ||||||||||||| ||||||||||||||
Sbjct 348 CCGGTTGTTGACCCGAAAACCCATTAGTACCCGTGGATCTTCTTCATCGGTTAGATCCAA 407
Query 417 CGGTTGTGGCGCTTACACGTCGTATTCAACTTCTAAAGCTATGCACTTCAGAAACCTCTC 476
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 408 CGGTTGTGGCGCTTACACGTCATATTCAACTTCCAAAGCTATGCACTTCAGAAACCTCTC 467
Query 477 AGGTTGCTATGAGTGCCACATGATTGTTGATCCAAGCAG 515
||||||||||||||| |||||||||||||||||||||||
Sbjct 468 AGGTTGCTATGAGTGTCACATGATTGTTGATCCAAGCAG 506
Score = 152 bits (82), Expect = 7e-36
Identities = 92/97 (95%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 517 TATCCAATAGCACCAAGAATATGTGCATGTCCACAGTGTGGGGAGGTTTTCCCTAAGCTT 576
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 629 TATCCAATAGCACCAAGAATATGTGCATGTCCACAGTGTGGGGAGGTCTTCCCTAAGCTT 688
Query 577 GAAACTTTGGAACTTCATCAAGCAGTTCGTCACGCTG 613
||| | ||||| | |||||||||||||||||||||||
Sbjct 689 GAATCATTGGAGCATCATCAAGCAGTTCGTCACGCTG 725
> AT1G75710.1 | Symbols: | C2H2-like zinc finger protein | chr1:28428706-28431249
FORWARD LENGTH=1610
Length=1610
Score = 327 bits (177), Expect = 1e-88
Identities = 339/416 (81%), Gaps = 16/416 (4%)
Strand=Plus/Plus
Query 453 AGCTATGCACTTCAG-AAACCTCTCAGGTTGCTATGAGTGCCACATGATTGTTGATCCAA 511
||| ||||| ||| | ||| ||||| || || || || || |||||||| ||||| || |
Sbjct 625 AGCCATGCAGTTCCGTAAA-CTCTCCGGATGTTACGAATGTCACATGATCGTTGACCCGA 683
Query 512 GCAGATATCCAATAGCACCAAGAATATGTGCATG-TCCACAGTGTGGGGAGGTTTTCCCT 570
|||| ||||| || | || || | ||||| || ||| || ||||| || ||||||||
Sbjct 684 GCAGGTATCCGATTTCGCCTAGGGTTTGTGCTTGTTCC-CAATGTGGAGAAGTTTTCCCC 742
Query 571 AAGCTTGAAA-CTTTGGAACTTCATCAAGCAGTTCGTCACGCTGTGTCAGAGTTAGGGCC 629
|||||||||| | || || ||||||||||||||||||||||| || || |||||||| ||
Sbjct 743 AAGCTTGAAAGC-TTAGAGCTTCATCAAGCAGTTCGTCACGCAGTTTCGGAGTTAGGTCC 801
Query 630 AGAGGATTCAGGG-AGAAACATAGTGGACATCATCTTCAAATCTAGCTGG-TTACGTAAA 687
|||||||| ||| ||||||||||||| ||||| |||||||| |||||| ||| |||
Sbjct 802 GGAGGATTC-GGGTCGAAACATAGTGGAGATCATATTCAAATCAAGCTGGCTTA-AAAAA 859
Query 688 GACAGTCCCATCTATAAGATCGAACGGATATTAAAAGTCCACAACACTCAACGCACGATC 747
||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 860 GACAGTCCCATCTGTCAGATCGAACGGATATTAAAAGTCCACAACACTCAACGTACGATC 919
Query 748 CAACGGTTCGAAGATTGTCGTGACGCAGTCAAATCCCATGCACATGCCTCCA-CCAGAAA 806
|||||||| || ||||| || |||||||| || | | ||||| | | || |||||||
Sbjct 920 CAACGGTTTGAGGATTGCCGAGACGCAGTGAAGGCGCGTGCACTT-CAAGCAACCAGAAA 978
Query 807 AGA-GCCACGATCTGCCGCCGACGGCAACGAGCTTCTTT-GCTTCCACTGCACCAC 860
||| || || | ||||||||||||||||||||| ||| | || |||||||||||
Sbjct 979 AGATGCT-CGTTGTGCCGCCGACGGCAACGAGCT-CTTACGTTTTCACTGCACCAC 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62399277435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5