BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913815

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32240.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...  56.5    1e-07


> AT2G32240.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: response to cadmium ion; LOCATED IN: plasma 
membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 
13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin 
(InterPro:IPR009053); BEST Arabidopsis thaliana protein match 
is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast 
hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria 
- 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; 
Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI 
BLink). | chr2:13684299-13691155 REVERSE LENGTH=4480
Length=4480

 Score = 56.5 bits (30),  Expect = 1e-07
 Identities = 30/30 (100%), Gaps = 0/30 (0%)
 Strand=Plus/Plus

Query  25   AGAAATTTGAAGAGCTGCATAAGCAAAGTG  54
            ||||||||||||||||||||||||||||||
Sbjct  807  AGAAATTTGAAGAGCTGCATAAGCAAAGTG  836



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13873898724


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5