BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913831
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48060.1 | Symbols: | F-box and associated interaction doma... 499 9e-141
> AT1G48060.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:17728295-17729448 FORWARD LENGTH=1062
Length=1062
Score = 499 bits (270), Expect = 9e-141
Identities = 419/489 (86%), Gaps = 18/489 (4%)
Strand=Plus/Plus
Query 1 ATGCCGTGTAATAAAGCTTCTGATGAGTGTCGGATTTTAACATTGGGTTCAGCAGATCAA 60
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 499 ATGCCGTGTGATAAAGCTTCTGATGAGTGTAGGATTTTAACATTGGGTTCAGCAGATCAA 558
Query 61 GAATCATGGAGAACGGTCAAAACCAATTATAAGCATCGCCCTTGCCGTGGCAATCGCAAA 120
|||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 559 GAATCATGGAGAACAGTCAAAACCAATTATAAGCATCACCCTAGCCGTGGCAATCGCAAA 618
Query 121 GACAATTATGGACCATGGAGATGCATCAACGGTGTTCTATATTATCGAGCCGAGATTGGT 180
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 619 AACAATTATGGACCATGCAGATGCATCAACGGTGTTCTATATTATCTAGCCGAGATTGAT 678
Query 181 CCTCATCGGGTTATAATGA-GTTTTGATGTAAAATCTGAAATGTTCCA-TGCGAT-AAGA 237
| |||||| | || || ||| | | | || | || | ||| || || || |
Sbjct 679 CGTCATCGACTCATCGGGAAGTTC-GCTTTTC--TCGGTCAT-T-CCAATGTGAAGAATA 733
Query 238 -T-TACC-ATG-GGAT----GAGGATGCAAAGAAGGGTGAATGGTCCACTTATAACTTTT 289
| | || ||| || | |||| || ||||||||| |||||||| |||||||| ||||
Sbjct 734 GTCTTCCCATGTGGGTTTTAGAGGGTGAAAAGAAGGGCGAATGGTCAACTTATAATTTTT 793
Query 290 TACCTCTTTCTCACTATGATCGTG-GTTCAGAGAACCATTTCAAGCTAATAGGTATGACT 348
|||||||||||||||||||||| | ||| |||| ||||||||||||||||||||| ||
Sbjct 794 TACCTCTTTCTCACTATGATCG-GCGTTTAGAGTTCCATTTCAAGCTAATAGGTATCACC 852
Query 349 AATGATGGTGAATTGATTTACGTACCAAACACGGTGTTCGAATCTTTTGATGTTATATAT 408
||||||||||||||||||||||||||||||||||| ||| || | ||||| ||||||||
Sbjct 853 AATGATGGTGAATTGATTTACGTACCAAACACGGTATTCAAAACATTTGAAGTTATATAC 912
Query 409 ATTGATCCAATAAGAAAGACGTTTAGAAGAGTCAAATACAAAGGAATTGCAGATAAAGAT 468
|||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |
Sbjct 913 ATTGATCCAATAAGAAAGACGTTTAGCCTTGTCAAATACGAAGGAGTTGCAGATAAAGGT 972
Query 469 TTTAGACAA 477
|||||||||
Sbjct 973 TTTAGACAA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24062156413
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5