BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913835

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48070.1 | Symbols:  | Thioredoxin superfamily protein | chr...   503    5e-142


> AT1G48070.1 | Symbols:  | Thioredoxin superfamily protein | chr1:17730491-17731122 
REVERSE LENGTH=531
Length=531

 Score =  503 bits (272),  Expect = 5e-142
 Identities = 321/345 (93%), Gaps = 2/345 (1%)
 Strand=Plus/Plus

Query  1    ATGTACTTGGTGGGCAGTGGCTTTAGTCAAGGGGAAGTGAAATGGTTGAGTAACGAAGTT  60
            |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  26   ATGTACTTGGTGGGTAGTGGCTTTAGTCAAGGGGAAGTGACATGGTTGAGTAACGAAGTT  85

Query  61   GAATGGCGACTTATTCTGACCACGACTCAACTTCCTATAGTTGTTACGGTAACATCCTCG  120
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  86   GAATGGCGACTTATTCTGACCACGACTCAACTTCCTATCGTGGTTACGGTAACATCCTCG  145

Query  121  TTGTGCCG-TGGCCGATGCGCTATATTGGATGATCAACTGGCTCGGTTGTCTGAAACTTA  179
            |||||| | || ||| ||| |||||||||||||||||||||| || ||||||||||| ||
Sbjct  146  TTGTGC-GATGACCGGTGCACTATATTGGATGATCAACTGGCCCGATTGTCTGAAACCTA  204

Query  180  TGGTAGCCTAATTATATTGCGTAAAGTCAATATTTTGACGAATCCATTCTTTAAAATACT  239
            ||||| |||||||||||| ||||||| |||||||||||||||||||||||||  ||||||
Sbjct  205  TGGTAACCTAATTATATTACGTAAAGCCAATATTTTGACGAATCCATTCTTTGCAATACT  264

Query  240  TTACAATTTAGCCAATGCCCCGGTCATCATAGTCTTCCAAACTGGAAAAGAAATAGGGCG  299
            ||||||||| | |||||||||| |||||||||||||||||||||||||||||||||  ||
Sbjct  265  TTACAATTTGGTCAATGCCCCGATCATCATAGTCTTCCAAACTGGAAAAGAAATAGCACG  324

Query  300  TTTAGTAGATGATTTATCTTGGGGTGCAATCACTGACATAATCGA  344
            ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  325  TTTAGAAAATGATTTATCTTGGGGTGCAATCACTGACATAATCGA  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5