BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913843

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48160.1 | Symbols:  | signal recognition particle 19 kDa pr...   732    0.0  


> AT1G48160.1 | Symbols:  | signal recognition particle 19 kDa 
protein, putative / SRP19, putative | chr1:17786545-17789024 
REVERSE LENGTH=1042
Length=1042

 Score =  732 bits (396),  Expect = 0.0
 Identities = 425/439 (97%), Gaps = 2/439 (0%)
 Strand=Plus/Plus

Query  1    ATGGATAGTGGAACCG-TCAACATCAAGAAATGGGTAGTGATATATCCAGTTTATATTAA  59
            ||||||||||||| || | ||||| |||||||||||||||||||||||||| ||||||||
Sbjct  371  ATGGATAGTGGAA-CGATAAACATTAAGAAATGGGTAGTGATATATCCAGTCTATATTAA  429

Query  60   CTCAAAGAAAACTGTAGCTGAGGGAAGAAGAATCAGTGTGAGTAAATCATGTGAGAACCC  119
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  430  CTCAAAGAAAACTGTAGCTGAGGGAAGAAGAATCAGTGTGAGTAAGTCATGTGAGAACCC  489

Query  120  GAATTGCATTGAGATTAGTGATTGTTGCAAGCATTTGAAACTCCCTAGTGCCGTCGAGAT  179
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  490  GAATTGCATCGAGATTAGTGATTGTTGCAAGCATTTGAAACTCCCTAGTGCCGTCGAGAT  549

Query  180  TGACAAAGCATACCCGCGCGATTTCATGCAAGTAGGGAGAGTGAGGGTGCAATTGAAAAG  239
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  550  TGACAAAGCATACCCGCGAGATTTCATGCAAGTAGGGAGAGTGAGGGTGCAATTGAAAAG  609

Query  240  GGAAGATGGGACTTTACTCAATCCATCCATTACTTCAAGGAAGCATCTGCTGCAGAAAAT  299
             |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct  610  AGAAGATGGTACTTTACTCAATCCAGCCATTACTTCAAGGAAGCATCTGATGCAGAAAAT  669

Query  300  TGCAGAGTTGGTACCAAGACATCCAGAGAGAGTGAAGAAGCAGGAAGCTCAGAAAGCGAA  359
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  670  TGCAGAGTTGGTACCAAGACATCCAGAGAGAGTAAAGAAGCAGGAAGCTCAGAAAGCGAA  729

Query  360  GAAGCAGGAACCTCAGACCACAACTTCAACCTCTGGAACTTCTTCAAAGTCAGGCAAAGG  419
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  730  GAAGCAGGAACCTCAGGCCACAACTTCAACCTCTGGAACTTCTTCAAAGTCAGGCAAAGG  789

Query  420  TGGCAAGAAGAAGAGATAA  438
            |||||||||||||||||||
Sbjct  790  TGGCAAGAAGAAGAGATAA  808



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20810848086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5