BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913844
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48170.1 | Symbols: | unknown protein; Has 78 Blast hits to... 726 0.0
AT1G48160.1 | Symbols: | signal recognition particle 19 kDa pr... 239 2e-62
> AT1G48170.1 | Symbols: | unknown protein; Has 78 Blast hits
to 78 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa
- 30; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:17788786-17790093 FORWARD
LENGTH=944
Length=944
Score = 726 bits (393), Expect = 0.0
Identities = 440/462 (95%), Gaps = 6/462 (1%)
Strand=Plus/Plus
Query 1 ATGGAGACTGAATACGACCAAGTTCTTAGCTCCGTTGCTCAGGTGAACATCGCCGACCAA 60
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 25 ATGGAGACTGAATACGACCAAGTTCTTCGATCCGTTGCTCAGGTGAACATCGCCGACCAA 84
Query 61 ATCGGAGATTCCGGCGACGT------AGACGGAGACGGTGTAAAAGTCTCGTGCTTCACT 114
|||||||| |||| |||||| ||||||| |||| |||||||| ||||||||||||
Sbjct 85 ATCGGAGAATCCGACGACGTAGAAAGAGACGGAAACGGCGTAAAAGTTTCGTGCTTCACT 144
Query 115 GAAGTTTTCGATGATGTCACTATCCAGTTCCAGATCATCCGTCTCGCGAAACAGATTTAC 174
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 GAAGTTTTCGATGATGTTACTATCCAGTTCCAGATCATCCGTCTCGCGAAACAGATTTAC 204
Query 175 GTATGGGTCGGTTGCAATTCCGCTAAATTTGGGAGTTTGTACGCAGCCGCTTCAACACGA 234
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 205 GTATGGGTCGGTTGCAATTCCGCCAAATTTGGGAGTTTGTACGCAGCCGCTTCAACACGA 264
Query 235 CCGAGTAATACAGTGAGTGTTACTTCAGTACTTGGTGGAACATCTGATAACACTGGATCT 294
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 265 CCGAGCAATACAGTGAGTGTTACATCGGTACTTGGTGGAACATCTGATAACACTGGATCT 324
Query 295 GGCATTGCTCGTAGATTAGTGTTGAAGACTGGTCTCAATATAATCCTGGCTTGCAACATC 354
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 325 GGCATTGCGCGTAGATTAGTGTTGAAGACTGGTCTCAATATAATACTGGCTTGCAACATC 384
Query 355 CCTAAAAACAATCCATTGCTTGAGGCAAAAGCTGAGAAAGTGTTGATCAGAAAGCTGATT 414
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 385 CCTAAAAACAATCCCTTGCTTGAGGCAAAAGCTGAGAAAGTGTTGATTAGAAAGCTGATT 444
Query 415 GATCTTGGTTACACAATGTCAAAACCTGTAAGAGCAACATAA 456
||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GATCTTGGTTACACAATGTCAAAACCTGTAAGAGCAACATAA 486
> AT1G48160.1 | Symbols: | signal recognition particle 19 kDa
protein, putative / SRP19, putative | chr1:17786545-17789024
REVERSE LENGTH=1042
Length=1042
Score = 239 bits (129), Expect = 2e-62
Identities = 160/174 (92%), Gaps = 6/174 (3%)
Strand=Plus/Minus
Query 1 ATGGAGACTGAATACGACCAAGTTCTTAGCTCCGTTGCTCAGGTGAACATCGCCGACCAA 60
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 215 ATGGAGACTGAATACGACCAAGTTCTTCGATCCGTTGCTCAGGTGAACATCGCCGACCAA 156
Query 61 ATCGGAGATTCCGGCGACGT------AGACGGAGACGGTGTAAAAGTCTCGTGCTTCACT 114
|||||||| |||| |||||| ||||||| |||| |||||||| ||||||||||||
Sbjct 155 ATCGGAGAATCCGACGACGTAGAAAGAGACGGAAACGGCGTAAAAGTTTCGTGCTTCACT 96
Query 115 GAAGTTTTCGATGATGTCACTATCCAGTTCCAGATCATCCGTCTCGCGAAACAG 168
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 95 GAAGTTTTCGATGATGTTACTATCCAGTTCCAGATCATCCGTCTCGCGAAACAG 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21715667568
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5