BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913849
Length=354
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48200.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 512 8e-145
> AT1G48200.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast
hits to 30 proteins in 12 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:17796764-17798337
REVERSE LENGTH=769
Length=769
Score = 512 bits (277), Expect = 8e-145
Identities = 331/357 (93%), Gaps = 3/357 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAACAAGATTGCAATGTTTCTCTCGGAGGCAATGAACAACAATGTTGTCATAAAC 60
|||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||
Sbjct 107 ATGGCGAACAAGATTGCAATGTTTCTCTCGGAAGCAATGAACAACAATGCTGTGATAAAC 166
Query 61 ACTTGTTTGGGAGTATCATTTGTGGTTTTGGGATTGAGATCTGATAAACAGCAAAAGTAT 120
|| ||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 167 ACGTGTCTAGGAGTATCGTTTGTGGTTTTGGGATTGAGATCTGATAAACAGCAGAAGTAT 226
Query 121 GTTGAGGCCTTAGCAGAGCAGAAGGATTCACTCTTCAAGTCTAATAAGGAAATGAAAGTC 180
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 227 GTTGAGGCCTTAGCAGAGCAGAAGGAGTCACTCTTCAAGTCTAATAAGGCAATGAAACTC 286
Query 181 ACAATATGGGAGTGGAAACAGCAGCTCTTTGCTGAAGCCGCTTCTGCGGGTAATGCCGCT 240
|| || |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 287 ACCATGTGGGAGTGGAAACAGCAGCTCTTTGCTGAAGCTGCCTCTGCGGGTAATGCCGCG 346
Query 241 GTTGTTCCTCTGTCGACGCTTAAGGCCATCTATGGCGAAG---CCACAACAACCACTCAA 297
||||||||| ||||||||||||||||||||||||| |||| |||| ||||||| ||||
Sbjct 347 GTTGTTCCTTTGTCGACGCTTAAGGCCATCTATGGTGAAGTTACCACCACAACCAATCAA 406
Query 298 TCTGGTGACACAGCCAAGGAAGAGTCTAAAGTGTCTACCCCCAAGATCATGATATGA 354
||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 407 TCTGGTGACACAGCCAAGGAAGATTCTAAAGTGTCCACTCCCAAGATCATGATATGA 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16588357170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5