BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913869

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48405.1 | Symbols:  | Kinase interacting (KIP1-like) family...   726    0.0  


> AT1G48405.1 | Symbols:  | Kinase interacting (KIP1-like) family 
protein | chr1:17884645-17885614 REVERSE LENGTH=894
Length=894

 Score =  726 bits (393),  Expect = 0.0
 Identities = 534/600 (89%), Gaps = 18/600 (3%)
 Strand=Plus/Plus

Query  1    ATGGAAGTCTCCACTTGTGATAAGCACAAGAACATTGAAGAGTTAGTCTCGCAGCTAATG  60
            |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||  | 
Sbjct  301  ATGGAAGTCTCCACTTGTGATATGCAAAAGAACATTGAAGACTTAGTCTCGCAGCTCGTT  360

Query  61   ACTGCAAACTGGGAGAAAGATACCGCAAAGCACGA-GTTGCAACGCAGAGAACAAAAGTT  119
            |||||||||| ||||||||||||||| |||||| |  || |||||||||||||||| |||
Sbjct  361  ACTGCAAACTTGGAGAAAGATACCGCGAAGCAC-ATATTACAACGCAGAGAACAAACGTT  419

Query  120  GCAAGAAGCTTCCAAGACAATTGACTTGCTAAAGAAGCTTGTGATGTTACTTGACATGGA  179
            ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct  420  GCAAGAAGCTTGCAAGACAATTGGCTTGCTAAAGAAGCTTGTGATGTTGCTTGATATGGA  479

Query  180  GAAAGAAGTAGCTCTAGAGGAAACAGCAAATCTCGGATACAAACTCACTTCTCTCCT---  236
            ||| ||||||||| |||| ||||| |||||||||||| ||||||| ||||| ||| |   
Sbjct  480  GAAGGAAGTAGCTGTAGAAGAAACCGCAAATCTCGGACACAAACTTACTTCCCTCTTGGA  539

Query  237  -G-G-A---AGAGCTCGCCACTGAAGCGCTGTTTATGAAAAAGGAAGCAGTTAGGCTAGC  290
             | | |   ||||||||||| |||||||||||| |||||||| |||||||||| ||| ||
Sbjct  540  AGAGAACCGAGAGCTCGCCAGTGAAGCGCTGTTCATGAAAAACGAAGCAGTTAAGCTTGC  599

Query  291  TAGATGCGTGCTTAAGATGAGGGATGAACATTTTCACAAGGTGTGTCATCTCCAGAACCA  350
            ||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  600  TAGGTGCGTTCTTAAGATGAGGGATGAACATTTTCACAAGATGTGTCATCTCCAGAACCA  659

Query  351  AATCTAC-ACGTTGCAGTCATCGAGAGAGTCTGTCTACGAAAATGTATCCTCGCCGAGCT  409
            ||||||| | | ||||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct  660  AATCTACGA-GCTGCAGTCATCGAGAGAGCCTGTCTACGAAAATGAATCCTCGCAGAGCT  718

Query  410  GCTTTGGATTGGATAATAGTaagaacaagagcaagaagagaaaaatgagtgaaactagaa  469
            ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct  719  GCTTTGGATTGGAAAATAGTAAGAAAAAGAGCAAGAAGAGAAAGATGAGTGAAACAAGAA  778

Query  470  gtgaa-catggagagaaaaagagaTACAAGTGGCTAAAGAGACTCAATACCATCAATCCC  528
            ||||| | ||||||||||| ||||| ||||||| | ||||||||||||||||||||||||
Sbjct  779  GTGAAAC-TGGAGAGAAAATGAGATCCAAGTGGTTCAAGAGACTCAATACCATCAATCCC  837

Query  529  TTTCCCAAATGTAGCATTACCCGCCTATCGTCTTCTCCGCTCCATCATGCTGCACTCTAA  588
            ||| ||||||||||||||||  ||| ||  |||||||| ||| |||||||||||||||||
Sbjct  838  TTTACCAAATGTAGCATTAC--GCC-ATTATCTTCTCCCCTCTATCATGCTGCACTCTAA  894



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28281824761


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5