BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913908
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48690.1 | Symbols: | Auxin-responsive GH3 family protein |... 287 5e-77
> AT1G48690.1 | Symbols: | Auxin-responsive GH3 family protein
| chr1:18009057-18009989 REVERSE LENGTH=732
Length=732
Score = 287 bits (155), Expect = 5e-77
Identities = 219/250 (88%), Gaps = 4/250 (2%)
Strand=Plus/Plus
Query 64 TCTGGAACTTCTGGAGGGAAACAAAAGATCTTTCCTGTGAACAACAAGTACTTCGAGAAT 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TCTGGAACTTCTGGAGGGAAACAAAAGATCTTTCCTGTGAACAACAAGTACTTCGAGAAT 441
Query 124 ATGGCATTCATCAATGGTCTATGCTCCTCCATTCTATCCAAGTACATCGATGGTGTCAGG 183
||| ||||||| | | | ||||||| |||| | ||||||||||||||||||| | ||
Sbjct 442 ATGATATTCATCCACGCTTTATGCTCGTCCACTATATCCAAGTACATCGATGGCATTGGG 501
Query 184 AAAGGAAAGGTGATGACGTTTCTCAACACTAGACCGTTGTC-TACAACTCCCTCTGGTTT 242
||||||| |||||| |||||||||| ||||||||||| | || |||||||||||||||
Sbjct 502 GAAGGAAAAGTGATGGCGTTTCTCAATACTAGACCGTT-TAGTAAAACTCCCTCTGGTTT 560
Query 243 GCCTATTGCTCCCCTGTCTACGAGCTTC-CTAATGAGTGATTATTTCAAGAACCTGCCTT 301
|||| ||||||| || ||||| ||||| ||| ||||||||||||||||||||| ||| |
Sbjct 561 GCCTGTTGCTCCTCTATCTACAAGCTTTGCTA-TGAGTGATTATTTCAAGAACCGGCCAT 619
Query 302 CAAAATGTTA 311
|||| |||||
Sbjct 620 CAAAGTGTTA 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17342373405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5