BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913909
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48740.2 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 726 0.0
AT3G18210.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 91.6 1e-17
> AT1G48740.2 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:18023387-18026065
REVERSE LENGTH=1544
Length=1544
Score = 726 bits (393), Expect = 0.0
Identities = 514/571 (90%), Gaps = 13/571 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGTGGACGGTGACGAAACTGTTGGAGGTGAAGATTCTCAACCACCGGTGACTACT 60
|||||| |||||||||||||||| || | ||||| |||||||||||||||||||||||||
Sbjct 106 ATGGCGTTGGACGGTGACGAAACAGTCGCAGGTGGAGATTCTCAACCACCGGTGACTACT 165
Query 61 GCGGCGGCGACGAC--A-GAGATGGCTACCGCGAGGCTGAGTCGGTTTCCTAACATGGAT 117
|| |||||||| || | |||| ||||| |||||||||||||| |||||||||||||||
Sbjct 166 GCAGCGGCGACTACAGAGGAGAAGGCTATCGCGAGGCTGAGTCCGTTTCCTAACATGGAG 225
Query 118 CACATTTGTGATAACTACGGAGATCTGAAACTGGAATTTAGCTCGT-CCGTGTTAAGCTC 176
||||||| ||||||||||||||||||| ||||||||| |||||| | || ||||||||||
Sbjct 226 CACATTTCTGATAACTACGGAGATCTGGAACTGGAATATAGCTC-TGCCATGTTAAGCTC 284
Query 177 TCTAGAGAAGTACTTGCCGCCGGAAATGCTCACGGCGAAC-AGAGAAGCGAAGGCCAAAT 235
|||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 285 GCTAGAGAAGTACTTGCCGCCGGAAATGCTCACGGCG-ACTAGAGAAGAGAAGGCCAAAT 343
Query 236 TCATGTCTGACATTTTGCGCAAGTACATTTCCCGTGAAGAATGTTCCAAAGCTAAATGGC 295
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 344 TCATGTCTGACATTTTGCGCAAGTACATTTCCCGCGACGAATGTTCCAAAGCTAAATGGT 403
Query 296 GCAACAACTATAGGCAGAGGAT-AATTGCAAAATATCAGCCACTCTAC-AGGGGA-TGGT 352
|||| |||||| |||||| ||| || | | || ||||||||||| | | | |||| | ||
Sbjct 404 GCAAGAACTATTGGCAGAAGATAAAAT-CTAATTATCAGCCACT-TTCTA-GGGAGTTGT 460
Query 353 GTAATTTTGATCCCGAATTGTTTCTGCTTCCCGCTTTCCGGAACGCGGTCAGCGAAAACA 412
||||||||||||||||||||||||||||||| ||||||| || ||| ||||||||||||
Sbjct 461 ATAATTTTGATCCCGAATTGTTTCTGCTTCCCTCTTTCCGAAAGGCGATCAGCGAAAACA 520
Query 413 CTGAGGAAAGCTTCAGACGCATCATTTCTGAACCGTTTCCTGGTGTTCTTGTCTTTCAAA 472
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CAAAGGAAAGCTTCAGACGTATCATTTCTGAACCGTTTCCTGGTGTTCTTGTCTTTCAAA 580
Query 473 TGTTTCAGCCTGACTTCTTTGAGAATTTGATACTAGAGGTAGAAAATGTCAGAAAGTGGG 532
||||||||||||||||| || |||| |||||| |||||||||||||| || |||||||||
Sbjct 581 TGTTTCAGCCTGACTTCATTCAGAAATTGATAGTAGAGGTAGAAAATATCGGAAAGTGGG 640
Query 533 CTCATGAGACAAATTTCCCGATCAGGAGACC 563
|||||||||||||||||| |||||||||||
Sbjct 641 TTCATGAGACAAATTTCCCAATCAGGAGACC 671
Score = 292 bits (158), Expect = 4e-78
Identities = 194/212 (92%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 575 TATTCTTCCCTGAAGAGTGTGGAGCAATGTTTGACTCTTACCATGGATTTTTTATTGAAA 634
|||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||
Sbjct 770 TATTCTTCCCTGAAGAGTGTGGAGCAATGTTTGACTCTCACCATGGATATTATATTGAAA 829
Query 635 ATGATGAAGATAGAGATGCTCCATTAGGCTATCATGTGGATGATTCAGAAATAACATTTA 694
||| ||||||||| ||| ||||||||||||||||| | |||||||| ||||||||||| |
Sbjct 830 ATGGTGAAGATAGGGATCCTCCATTAGGCTATCATTTAGATGATTCGGAAATAACATTGA 889
Query 695 ATGTTTGTGTGAGGAAACAATTTGAGGGAGGGGAAATATCTTTCGTAGGCACACGATGCC 754
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 890 ATGTTTGTGTGAGGAAACAATTTGAGGGAGGGGAAATATCTTTCATAGGCACACGATGCT 949
Query 755 AGAAACATAAGCAAACAAATATAAAGCCAGAG 786
|| |||||||| |||| | |||||||||||
Sbjct 950 TGAGACATAAGCGAACAGACGTAAAGCCAGAG 981
Score = 244 bits (132), Expect = 1e-63
Identities = 206/239 (86%), Gaps = 16/239 (7%)
Strand=Plus/Plus
Query 836 AGGAAGTTTTT-AGGTACTTTCATACACAAGGTCAAGCTATACTTCACCGTGGCCGCCAC 894
||||||||||| | |||| |||| ||| ||||||||||||||||| ||||||||||||
Sbjct 980 AGGAAGTTTTTCA-TTACTGTCATTCACCGGGTCAAGCTATACTTCATCGTGGCCGCCAC 1038
Query 895 CGCCATGGTGCCAGAGCCACCGCACCATCTTGTTATCGGGCCAATATGATTCTTT-TCTG 953
||||||||| ||||||||| | |||||||||||| |||||||||||||||||||| | ||
Sbjct 1039 CGCCATGGTCCCAGAGCCAACACACCATCTTGTTCTCGGGCCAATATGATTCTTTGT-TG 1097
Query 954 TAGAAACTCTTTGTTTAGAGAGATGGAAACTTATAAGAAGGAATTCCCAGAGTGGTGC-- 1011
|||||||||||||||||||||||||||| ||| |||| || |||||||||||||||
Sbjct 1098 CAGAAACTCTTTGTTTAGAGAGATGGAAAAATATGAGAAAGATTTCCCAGAGTGGTGCAA 1157
Query 1012 ------C----ATGAAAAGAAAGAAAAGGAAAGCCAGAGTCTTGCTGCCAAAAGAAAGG 1060
| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1158 TGAATGCGCCCATGAAAAGAAAGAAAAGGAAAGCCAGAGTCTTGATGCCAAAAGAAAGG 1216
> AT3G18210.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:6237930-6240605
REVERSE LENGTH=1728
Length=1728
Score = 91.6 bits (49), Expect = 1e-17
Identities = 123/158 (78%), Gaps = 7/158 (4%)
Strand=Plus/Plus
Query 855 TCATACACAAGGTCAAGCTATACTTCACCGTGGCCGCCACCGCCATGGTGCCAGAGCCAC 914
||||| || || |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1148 TCATATACCTGGACAAGCTGTGCTTCACCGTGGCCGCCACCGCCATGGTGCCAGAGCCAC 1207
Query 915 CGCACCAT-CTTGTTATCGGGCCAATATGATTCTTTTCTGTAGAAACTCTTTGTTTAGAG 973
|| || | | |||||| ||||||| |||| | || |||| ||| | |||||||
Sbjct 1208 A--AC-ATGCGGGC-ATCGGGTCAATATGCTTCTATGGTGCAGAAGTTCTGTATTTAGAG 1263
Query 974 AGATGGAAACTTATAAGAAGGAATTC-CCAGAGTGGTG 1010
|| | ||||| || | ||||| ||| |||| |||||
Sbjct 1264 AGCTCAAAACTCATCACAAGGATTTCTCCAGC-TGGTG 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5