BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913919
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48800.1 | Symbols: | Terpenoid cyclases/Protein prenyltran... 1031 0.0
AT1G48820.1 | Symbols: | Terpenoid cyclases/Protein prenyltran... 514 1e-144
> AT1G48800.1 | Symbols: | Terpenoid cyclases/Protein prenyltransferases
superfamily protein | chr1:18049844-18052975 FORWARD
LENGTH=1812
Length=1812
Score = 1031 bits (558), Expect = 0.0
Identities = 616/645 (96%), Gaps = 0/645 (0%)
Strand=Plus/Plus
Query 1081 GATTATTTAAAATCTGTGGCTAAATTTATATTTAATACCTTCCAAGAGTTTGAAAGAGAA 1140
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1168 GATTATTTAAAATCTGTGGCCAAATTTATATTTCATACCTTCCAAGAGTTTGAAAGAGAA 1227
Query 1141 GTGGGGTCAGAATCAGGAGGATCTTACAGCTTGAAAGCTACAATTGAAGACTGCAAGAGA 1200
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1228 GTGTCGTCAGAATCAGGAGGATCTTACAGCTTGAAAGCTACAATTGAAGATTGCAAGAGA 1287
Query 1201 ATGATGAGAAGCAATCTTCAACTGGCCAAATGGGCAGTAACGGGTCACTTGCCTGGCTTT 1260
|||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1288 ATGATGAGAAGCAACCTTCAACTTGCCAAATGGGCAGTAACGGGTCACTTGCCTAGCTTT 1347
Query 1261 GATGAGTACCTAGATGTTGCTGGAGTCGAGATAGCCATAGATTTTACCTTGGCAGGTATT 1320
||||||||||||||||| |||||||||||||| ||| || |||||||| |||||||||||
Sbjct 1348 GATGAGTACCTAGATGTCGCTGGAGTCGAGATCGCCGTATATTTTACCGTGGCAGGTATT 1407
Query 1321 TTGTTGGGTATGGACAATATCAACAAGAAAGAAGCTTATGAGTGGTTGATATTTAGAGAC 1380
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 TTGTTGGGCATGGAAAATATCAACAAGAAAGAAGCTTATGAGTGGTTGATATTTAGAGAC 1467
Query 1381 AAACTCGTTAGAGCAATGTCTACAAAAGCAAGACTGGTGAATGATTTGTTTGGCTATAAG 1440
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1468 AAACTCGTAAGAGCAATGTCTACAAAAGCACGACTGGTGAATGATTTGTTTGGCTATAAG 1527
Query 1441 GATGACATGAGGAGAGGATATGTCACGAACTCGATTAACTGTTATAAGAAGCAATATGGA 1500
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1528 GATGACATGAGGAGAGGATATGTCACGAACTCGATCAACTGTTATAAGAAGCAATATGGA 1587
Query 1501 GTTACCGAAGAAGAAGCCTTTAGAAAGCTTCATCAAATAGTTGCGGAAGGTGATAAGATG 1560
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1588 GTTACCGAAGAAGAAGCCTTTAGAAAGCTTCATCAAATGGTTGCGGACGGTGATAAGATG 1647
Query 1561 ATGAATGAGGAGTTTTTGAAGCCAATCAATGTGCCACATCAGGTTCTAAAAGCAGTCCTC 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 ATGAATGAGGAGTTTTTGAAGCCAATCAATGTGCCACATCAGGTTCTAAAAGCAGTCCTC 1707
Query 1621 GACACGTTACGTGCGGTTAATATTTGCTACGACAATGAAGATGGATTTACCCGTCTCGAT 1680
||||| |||||||| |||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 1708 GACACTTTACGTGCAATTAACATTTGCTACGACAATGAAGATGGATTTACCCGACTCAAT 1767
Query 1681 GGCAATCTCAAGAACTACATCACGTCTATGTACGTTGATATTTGA 1725
|| ||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1768 GGTAATCTGAAGAACTACATCACGTCTATGTACGTTGATCTTTGA 1812
Score = 1020 bits (552), Expect = 0.0
Identities = 680/740 (92%), Gaps = 15/740 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGCCATAAGAGTTTTTGGACCAAAACTTGGATCTAAACTCTCTATTCGTTCTCAG 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAAGCCATAAGAGTTTTTGGACCAAAACTTGGATCTAGACTCTCTATTCGTTCTCAC 60
Query 61 ACCAGTGCATTTCCGCCATGCAAACTCTCTCCCTTTCCGCTGAC-TCAAATTT-CCAGCA 118
|||| |||||||||| ||||||||||||||| ||||||||| || || |||| || | |
Sbjct 61 ACCACTGCATTTCCGGCATGCAAACTCTCTCGCTTTCCGCTAACGTC--ATTTCCCGGTA 118
Query 119 AGCCTCTC-CATCTTATTCCTTTGAGGGCCACTACTATTCCTCTGGCTTGTGATGATAAA 177
||| | | |||||| ||| ||||| ||||||||||||||||||||| | || ||| |||
Sbjct 119 AGCAT-GCACATCTTGTTCTTTTGAAGGCCACTACTATTCCTCTGGCGTCTGGTGACAAA 177
Query 178 GAAAATAATCGCAAATTCGAAAAGTTGGGTCCTTCTGAATGGGGTC-ATCAATTCCTCTC 236
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 178 GAAAATAATCGCAAATTCGAAAAGTTGGGTCCTTCTGAATGGGG-CAATCAATTCCTTTT 236
Query 237 TGCTCATGTTGATCTCTCAGAAATGGAGGCGCTCGGGAGAGAGATAGAGGCACTAAAGCC 296
||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||
Sbjct 237 TGCTCATGTTGATCTCTCAGAAATGGATGCGCTTGAGAGAGAGATTGAGGCACTAAAGCC 296
Query 297 GAAAGTGAGGGACATGTTCAAGTCTTTCAAAGGAATGAAGTCGAACAAGAAGAATTT-TC 355
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 297 GAAAGTGAGGGACATGTTCATGTCTTTCAAAGGAATGAAGTCGAACAAGAAGAATTTGT- 355
Query 356 TTTTAATATATTTGCTTGTGAGTCTTGGTCTCGCACATCATTTCGAGGATGAGATCGAGA 415
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 356 TTTTGATATATTTGCTTGTGAGTCTTGGTCTCGCTCATCATTTCGAGGATGAGATCGAGG 415
Query 416 AGAGTATCAAA-GATGATTCCCAAGAGATGGAGGAGATGATGG-CGGGTGAAAATGATTT 473
||||| ||||| | || |||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 416 AGAGTGTCAAAGGTTG-TTCCCAAGAGATGGTGGAGATGATGGAC-GGTGAAAATGATTT 473
Query 474 GTACACAGTTTCCATCATCTTCTGGGTTTTCAGGACATATGGTCACAACATTTCTTCCGA 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 474 GTACACAGTTTCCATCATCTTCTGGGTTTTCAGGACATATGGTCACAACATTTCTTCTGA 533
Query 534 TGTTTTTAACAGATTCAAAGGGGACAACGGAAAATTTAAGGAATGTCTTGCCACCGATGC 593
| ||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 534 TATTTTTAACAGATTTAAAGGACACAATGGAAAGTTTAAGGAATGTCTTGCCACCGATGC 593
Query 594 TAAGGGTATCCTGAGCTTGTATGAAGCTGCTCACATGGGGACGACGACCGATTATATATT 653
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 594 TAAGGGTATCCTAAGCTTGTATGAAGCTGCTCACATGGGGACGACAACCGATTATATATT 653
Query 654 GGATGAAGCCTTGAGCTTCGCATTGAGTTACTTGAAGTCGTTAGCAGCAAGTGGGATATG 713
||||||||||||||||||| |||||||||||||| |||||||||| |||| ||||| |||
Sbjct 654 GGATGAAGCCTTGAGCTTCACATTGAGTTACTTGGAGTCGTTAGCTGCAAATGGGACATG 713
Query 714 CAAACCTAATCTC-TCAGGC 732
||||||||||||| | ||||
Sbjct 714 CAAACCTAATCTCGTGAGGC 733
Score = 508 bits (275), Expect = 5e-143
Identities = 313/332 (94%), Gaps = 0/332 (0%)
Strand=Plus/Plus
Query 736 AAGAACGTGGAGATATTAGTCGCAAAGGAATATATCCGGTTCTATAAACAAGAAGAAGAT 795
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 766 AAGAACGTGGAGATATTAGTCGCAAAGGAATATATCCGGTTCTACGAACAAGAAGAAGAT 825
Query 796 TGCGATAATACGCTACTCAAGTTTGCCAAGCTTAACCTCAAATTCCTACAGCTACATTAC 855
|||||||| || ||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 826 TGCGATAAGACTATACTCGAGTTTTCCATGCTTAACCTCAAATTCCTACAGCTACATTAC 885
Query 856 CTTCAAGAACTCAAAATCCTTTCAAAATGGTACAAGGAACAAGACTTTGAATCTAAGTTG 915
||||||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 886 CTTCAAGAACTCAAACTTCTTACAAAATGGTACAAGGAACAAGACTTTGAATCCAAGTTG 945
Query 916 CCACCTTACTACAGAGACAGAATCGCGGAACTGCACCTCGCTACGCTAGCATACATCAAT 975
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 946 CCACCTTACTACAGAGACAGAATCGTGGAACTGCACCTCGCTACGCTAGCATACATCAAT 1005
Query 976 CCAAAATACTCACGTGTGAGAATTTTTCTGACTAAGATTTACACGATTCAAATAATTCTA 1035
|| ||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||
Sbjct 1006 CCGAAATACTCACGTGTGAGGATTATTCTGACTATGATTTACACTATTCAAATAATTCTA 1065
Query 1036 GATGATACATGTGACAGATATGCTTCTCTTCG 1067
|||||||| |||||||||||||||||||||||
Sbjct 1066 GATGATACGTGTGACAGATATGCTTCTCTTCG 1097
> AT1G48820.1 | Symbols: | Terpenoid cyclases/Protein prenyltransferases
superfamily protein | chr1:18055229-18059367 FORWARD
LENGTH=1686
Length=1686
Score = 514 bits (278), Expect = 1e-144
Identities = 457/542 (84%), Gaps = 17/542 (3%)
Strand=Plus/Plus
Query 1192 TGCAAGAGAAT-GATGAGAAGCAATCTTCAACTGGCCAAATGGGCAGTAA-CGGGTCACT 1249
|||||||| || | |||| | ||| |||||| | || ||||||| | || |||||||||
Sbjct 1150 TGCAAGAG-ATCGTTGAGGATCAACCTTCAAGTCGCTAAATGGGTA-AAAGCGGGTCACT 1207
Query 1250 TGCCTGGCTTTGATGAGTACCTAGATGTTGCTGGAGTCGAGATAGCCATAGATTTTACCT 1309
||||| ||||||||||||||||||||||||||||| ||||| | || ||| ||||||||
Sbjct 1208 TGCCTAGCTTTGATGAGTACCTAGATGTTGCTGGACTCGAGCTCGCTATATCTTTTACCT 1267
Query 1310 TGGCAGGTATTTTGTTGGGTATGGACAATATCAACAAGAAAGAAGCTTATGAGTGGTTGA 1369
| |||||||||||| |||||||||| ||| || |||| |||||||||||||||||||
Sbjct 1268 TCGCAGGTATTTTGATGGGTATGGAAAATGTCTGCAAGCCGGAAGCTTATGAGTGGTTGA 1327
Query 1370 TATTTAGAGACAAACTCGTTAGAGCAAT-GTCTACAAAAG-CAAGACTGGTGAATGATTT 1427
|| |||||||||||||||||||| | | | |||||||| | || || |||||||| |
Sbjct 1328 AATCTAGAGACAAACTCGTTAGAGGAGTAAT-TACAAAAGTC-CGATTGTTGAATGATAT 1385
Query 1428 GTTTGGCTATAAGGATGACATGAGGAGAGGATATGTCACGAACTCGATTAACTGTTATAA 1487
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1386 CTTTGGCTATGAGGATGACATGAGGAGAGGATATGTCACGAACTCGATCAACTGTTATAA 1445
Query 1488 GAAGCAATATGGAGTTACCGAAGAAGAAGCCT-TTAGAAAGCTTCATCAAATAGTTGCGG 1546
||||||||| |||||||| ||||||| || || ||||||||||||||||||| ||||| |
Sbjct 1446 GAAGCAATACGGAGTTACGGAAGAAG-AGGCTATTAGAAAGCTTCATCAAATTGTTGCAG 1504
Query 1547 AAGGTGATAAGATGATGAATGAGGAGTTTTTGAAGCCAATCAATGTGCCACATCAGGTTC 1606
| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1505 ACGGTGAAAAGATGATGAATGAGGAGTTTTTGAAGCCAATCAATGTGCCATACCAGGTTC 1564
Query 1607 TAAAAGCAGTC---CTCGACACGTTACGTGCGGTTAATATTTGCTACGACAATGAAGATG 1663
||| | |||| |||||||| |||||||||| ||| | |||| || || || ||||
Sbjct 1565 CAAAGGTAGTCATTCTCGACACTTTACGTGCGGCGAATGTCAGCTATGAAAAGGATGATG 1624
Query 1664 GATTTACCCGTC-TCGATGG-CAATCTCAAGAACTACATCACGTCTATGTACGTTGATAT 1721
||||||||||| | | || || ||||||||||| ||||||||| || || ||||| |
Sbjct 1625 AATTTACCCGTCCTGG-TGAACA-TCTCAAGAACTGCATCACGTCAATTTATTTTGATCT 1682
Query 1722 TT 1723
||
Sbjct 1683 TT 1684
Score = 484 bits (262), Expect = 9e-136
Identities = 414/483 (86%), Gaps = 27/483 (6%)
Strand=Plus/Plus
Query 1 ATGGAAGCCATAAGAGTTTTTGGACCAAAACTTGGATCTAAACTCTCTATTCGTTCTCAG 60
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGAAGCCATAAGAGTTTTTGGACTAAAACTTGGATCTAAACTCTCTATTCATTCTCAG 60
Query 61 ACCAGTGCATTTCCGCCATGCAAACTCTCTCCCTTTCCGCTGAC-TCAAATTT-CCAGCA 118
|||| |||||||||| ||| |||||||||| |||||||||||| || |||| || | |
Sbjct 61 ACCAATGCATTTCCGGCATTTAAACTCTCTCGCTTTCCGCTGACGTC--ATTTCCCGGAA 118
Query 119 AGCCTCTC-CATCTT-ATTCCTTTGAGGGCCACTACT-ATTCCTCTGGCTTGTGATGATA 175
||| | | |||||| | |||||||| |||||||||| | |||| |||||| ||| | |
Sbjct 119 AGCAT-GCACATCTTGA-TCCTTTGAAGGCCACTACTCA-TCCTTTGGCTTTTGACGGTG 175
Query 176 AAGAAAATAATCGCAAATTCGAAAAGTTGGGTCCTTCTGAATGGGGTCATCAATTCCTCT 235
|||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 176 AAGAAAATAATCGCGAATTCAAAAATTTGGGTCCTTCTGAATGGGGTCATCAATTCCTCT 235
Query 236 CTGCTCATGTTGATCTCTCAGAAATGGAGGCGCTCGGGAGAGAGATAGAGGCACTAAAGC 295
|||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 236 CTGCTCATGTTGATCTCTCAGAAATGGATGCGCTTGAGAGAGAGATAGAGGCACTAAAGC 295
Query 296 CGAAAGTGAGGGACATGTTCA-AGTCTTTCAAAGGAATGAAGTCGAACAAGAAGAATTTT 354
| ||||| ||||||||||| | | |||| | ||| ||||| ||||||||| |
Sbjct 296 CAAAAGTAAGGGACATGTTGATA-TCTT-C-------TGA-GTCGAGCAAGAAGAAAATC 345
Query 355 CTTTTAATATATTTGCTTGTGAGTCTTGGTCTCGCACATCATTTCGAGGATGAGATCGAG 414
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 346 CTTTTTCTATATTTGCTTGTGAGTCTTGGTCTCGCATATCATTTCGAGGATGAGATCAAG 405
Query 415 -AAGAGTATCA-AAGATGAT-TCCCAAGAGATGGAGGAGATGATGGCGGGTGAAAATGAT 471
|| ||| | | |||||| | | | || |||| |||||||||||||| ||||| |||||
Sbjct 406 GAA-AGTCT-AGAAGATGGTCTTCAAA-AGATAGAGGAGATGATGGCTAGTGAAGATGAT 462
Query 472 TTG 474
|||
Sbjct 463 TTG 465
Score = 250 bits (135), Expect = 4e-65
Identities = 173/191 (91%), Gaps = 3/191 (2%)
Strand=Plus/Plus
Query 544 AGATTCAAAGGGGACAACGGAAAATTTAAGGAATGTCTTGCCACCGATGCTAAGGGTATC 603
||||||||||| ||||| |||||||||||||||||||| || | |||||||||||||||
Sbjct 466 AGATTCAAAGGAGACAATGGAAAATTTAAGGAATGTCTAGCTAAAGATGCTAAGGGTATC 525
Query 604 CTGAGCTTGTATGAAGCTGCTCACATGGGGACGACGACCGATTATATATTGGATGAAGCC 663
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 526 CTGAGCTTGTATGAAGCTGCTCACATGGGAACAACGACCGATTATATATTGGATGAAGCC 585
Query 664 TTGAGCTTCGCATTGAGTTACTTGAAGTCGTTAGCAGCAAGTGGGA-TATGCAAACCTAA 722
||||||||| |||||| |||| || |||||||||| |||||||||| | |||||| |||
Sbjct 586 TTGAGCTTCACATTGACTTACATGGAGTCGTTAGCTGCAAGTGGGACT-TGCAAAATTAA 644
Query 723 TCTCTCA-GGC 732
||||||| |||
Sbjct 645 TCTCTCAAGGC 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85290725955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5