BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913921
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48820.1 | Symbols: | Terpenoid cyclases/Protein prenyltran... 880 0.0
AT1G48800.1 | Symbols: | Terpenoid cyclases/Protein prenyltran... 750 0.0
> AT1G48820.1 | Symbols: | Terpenoid cyclases/Protein prenyltransferases
superfamily protein | chr1:18055229-18059367 FORWARD
LENGTH=1686
Length=1686
Score = 880 bits (476), Expect = 0.0
Identities = 705/812 (87%), Gaps = 30/812 (4%)
Strand=Plus/Plus
Query 779 GAGACAGAATCGTGGAAATG-CACCTCG-TTACACTAACATACTTCGAACCAAAATACTC 836
|||||||| |||| | |||| ||| ||| | ||||||||| |||||||||||||||| |
Sbjct 881 GAGACAGACTCGTTG-AATGTCACTTCGCGT-CACTAACATGCTTCGAACCAAAATACGC 938
Query 837 ACGTGTGAGGATCTTTCTGACTAAGATTTATACGATTCAAATCA-TTGTAGATGATACGT 895
||||| |||||||||| ||| |||||||| |||| ||||||| | || ||||||||||||
Sbjct 939 ACGTGCGAGGATCTTTTTGAGTAAGATTTTTACGGTTCAAAT-ATTTATAGATGATACGT 997
Query 896 GTGACAGATATGCTTCTCTTGGTGAGGTTGAAAGCCTCGCAGATACAATCGAAAGGTGGG 955
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 998 GTGACAGGTATGCTTCTCTTGGTGAGGTTGAAAGCCTCGCAGATACCATCGAAAGGTGGG 1057
Query 956 ATCCCGATGATCATGGCATAGATGAACTACCAGATTATTTAAAATCTGTAGTGAAATTTA 1015
||||||||||||||| ||| |||| ||||||||||||||| ||||||||||| ||||||
Sbjct 1058 ATCCCGATGATCATGCCATGGATGGACTACCAGATTATTTGAAATCTGTAGTTAAATTTG 1117
Query 1016 TATTTGATACCTTCCAAGAGTTTGAAAGAGAA-TGCAAGAGAAT-GATGAGAAGCAATCT 1073
|||| ||||||||||||||||||||||| || |||||||| || | |||| | ||| ||
Sbjct 1118 TATTCAATACCTTCCAAGAGTTTGAAAGA-AAGTGCAAGAG-ATCGTTGAGGATCAACCT 1175
Query 1074 TCAACTGGCCAAATGGGCAGTAA-CGGGTCACTTGCCTAGCTTTGATGAGTACCTAGATG 1132
|||| | || ||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 1176 TCAAGTCGCTAAATGGGTA-AAAGCGGGTCACTTGCCTAGCTTTGATGAGTACCTAGATG 1234
Query 1133 TTTCTGGTGTCGAGATCGCTCTATATTTTACCCTGGCATGTATTTTGATGGGTATGGAAA 1192
|| |||| ||||| ||||| ||| ||||||| | ||| |||||||||||||||||||||
Sbjct 1235 TTGCTGGACTCGAGCTCGCTATATCTTTTACCTTCGCAGGTATTTTGATGGGTATGGAAA 1294
Query 1193 ATATCTGCAAGAAAGAAGCTTATGAGTGGTTGAAATCTAGAGACAAACTCGTTAGAGCAT 1252
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1295 ATGTCTGCAAGCCGGAAGCTTATGAGTGGTTGAAATCTAGAGACAAACTCGTTAGAGGAG 1354
Query 1253 TGACCGCAAAAG-CACGAGTGTTGAATGATATACTT-GGCT-TCGAGGATGACATGAGCC 1309
| | |||||| | ||| ||||||||||||| ||| |||| | ||||||||||||||
Sbjct 1355 TAATTACAAAAGTC-CGATTGTTGAATGATAT-CTTTGGCTAT-GAGGATGACATGAGGA 1411
Query 1310 GAGGATATGTCACGAACTCGATCAACTGTTATAAGAAACAATATGGAGTTACAGAAGAAG 1369
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 1412 GAGGATATGTCACGAACTCGATCAACTGTTATAAGAAGCAATACGGAGTTACGGAAGAAG 1471
Query 1370 AGGCTTTTAGAAAGCTTCATCAAATGGTTGCAGACCTTGATAAGATGATGAATGAGGAGT 1429
||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||
Sbjct 1472 AGGCTATTAGAAAGCTTCATCAAATTGTTGCAGACGGTGAAAAGATGATGAATGAGGAGT 1531
Query 1430 TTTTGAAGACAATTTAT-T---AT-C----TT--AA-GATATTCATTATCGACACTTTAC 1477
|||||||| |||| || | || | || || | || ||||| ||||||||||||
Sbjct 1532 TTTTGAAGCCAATCAATGTGCCATACCAGGTTCCAAAGGTAGTCATTCTCGACACTTTAC 1591
Query 1478 GCGCAGCGAATGTTAGTTATGAAAAGGATGATGAATTCACCCGTCCTGGTGAACATCTCA 1537
| || |||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1592 GTGCGGCGAATGTCAGCTATGAAAAGGATGATGAATTTACCCGTCCTGGTGAACATCTCA 1651
Query 1538 AGAACTGTATCACGTCACTGTACGTTGATCTT 1569
||||||| ||||||||| | || ||||||||
Sbjct 1652 AGAACTGCATCACGTCAATTTATTTTGATCTT 1683
Score = 453 bits (245), Expect = 2e-126
Identities = 386/451 (86%), Gaps = 22/451 (5%)
Strand=Plus/Plus
Query 23 GATCTAAACTCTCTATTCGTTCTGAAACCAAAACATTACCGGCATGCAAAGTGTCTCGCT 82
|||||||||||||||||| |||| | ||||| |||| ||||||| ||| | |||||||
Sbjct 35 GATCTAAACTCTCTATTCATTCTCAGACCAATGCATTTCCGGCATTTAAACTCTCTCGCT 94
Query 83 TTCCGCTGACGTCATTTCCCGGCAAGCATGCACATATTGTTCCTTTGAAGGCCACTACTA 142
|||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||
Sbjct 95 TTCCGCTGACGTCATTTCCCGGAAAGCATGCACATCTTGATCCTTTGAAGGCCACTAC-- 152
Query 143 TTACTTCTCTGGCTTATTGTGACGATGAAGAAAATAATCGC-AAGTACAAAGAGATGGCC 201
| | | || |||| | || ||||| |||||||||||||||| || | |||| | |||
Sbjct 153 TCA-TCCTTTGGC-T-TT-TGACGGTGAAGAAAATAATCGCGAA-TTCAAAAATTTGGGT 207
Query 202 CCTTCTGAATGGGGTCATCGATTCCTCTCTGCTCATGTTGATTTCTCAGAAATGGATGTG 261
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct 208 CCTTCTGAATGGGGTCATCAATTCCTCTCTGCTCATGTTGATCTCTCAGAAATGGATGCG 267
Query 262 CTTGGGAGAGAGATAGAGGCACTAAAGCCGCAAA-TGAGGGACATGTTGATGTCTTCCAA 320
|||| |||||||||||||||||||||||| ||| | |||||||||||||| |||||
Sbjct 268 CTTGAGAGAGAGATAGAGGCACTAAAGCCA-AAAGTAAGGGACATGTTGATATCTTCT-- 324
Query 321 AGGCATTAATAAGTCGAGCAAGAAGAAAATCCTATTTATCTATTTGCTTGTGAGTCTTGG 380
| | ||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 325 -G--A-------GTCGAGCAAGAAGAAAATCCTTTTTCTATATTTGCTTGTGAGTCTTGG 374
Query 381 TCTCGCGTTTCATTTCGAGGATGAGATCGAGGAGAGTCTAAAAGATGGTCTTCGAGAGAT 440
|||||| | ||||||||||||||||||| |||| |||||| |||||||||||| | ||||
Sbjct 375 TCTCGCATATCATTTCGAGGATGAGATCAAGGAAAGTCTAGAAGATGGTCTTCAAAAGAT 434
Query 441 AGAGGAGATTATGGCTGGTGAAGATGATTTG 471
||||||||| |||||| ||||||||||||||
Sbjct 435 AGAGGAGATGATGGCTAGTGAAGATGATTTG 465
Score = 363 bits (196), Expect = 4e-99
Identities = 232/250 (93%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 529 GGAGACAATGGAAAATTTAAGGAATGTCTTGCTAAAGATGCTAAGGGTATCCTGAGCTTG 588
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 475 GGAGACAATGGAAAATTTAAGGAATGTCTAGCTAAAGATGCTAAGGGTATCCTGAGCTTG 534
Query 589 TATGAAGCTGCTCACATGGGGACGACAACAGATTATATATTGGATGAAGCCTTGAGCTTC 648
|||||||||||||||||||| || || || ||||||||||||||||||||||||||||||
Sbjct 535 TATGAAGCTGCTCACATGGGAACAACGACCGATTATATATTGGATGAAGCCTTGAGCTTC 594
Query 649 ACATTGAGTAACTTGGAGTCGCTAGCTGCAAGTGGGACATGCAAACTTAACCTCTCAAGA 708
||||||| | || |||||||| |||||||||||||||| |||||| |||| ||||||||
Sbjct 595 ACATTGACTTACATGGAGTCGTTAGCTGCAAGTGGGACTTGCAAAATTAATCTCTCAAGG 654
Query 709 CGTATACGAAAAGCTTTGGATCAACCGCAGCATAAAAACATGGAGATATTAGTCGCAAAG 768
||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| |
Sbjct 655 CGTATACGAAAAGCTTTGGATCAACCGCAACATAAGAACATGGAGATAATAGTCGCAATG 714
Query 769 GAATATATCC 778
|||||||||
Sbjct 715 AAATATATCC 724
> AT1G48800.1 | Symbols: | Terpenoid cyclases/Protein prenyltransferases
superfamily protein | chr1:18049844-18052975 FORWARD
LENGTH=1812
Length=1812
Score = 750 bits (406), Expect = 0.0
Identities = 668/787 (85%), Gaps = 48/787 (6%)
Strand=Plus/Plus
Query 23 GATCTAAACTCTCTATTCGTTCTGAAACCAAAACATTACCGGCATGCAAAGTGTCTCGCT 82
|||||| |||||||||||||||| | |||| |||| |||||||||||| | |||||||
Sbjct 35 GATCTAGACTCTCTATTCGTTCTCACACCACTGCATTTCCGGCATGCAAACTCTCTCGCT 94
Query 83 TTCCGCTGACGTCATTTCCCGGCAAGCATGCACATATTGTTCCTTTGAAGGCCACTACTA 142
||||||| |||||||||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct 95 TTCCGCTAACGTCATTTCCCGGTAAGCATGCACATCTTGTTCTTTTGAAGGCCACTACTA 154
Query 143 TTACTTCTCTGGCTTATTGTGACGATGAAGAAAATAATCGCAAGTAC-AAAGAGATGGCC 201
|| | ||||||| | | ||||| | |||||||||||||||| | | ||| || |||
Sbjct 155 TT-C--CTCTGGCGTCTGGTGAC-A--AAGAAAATAATCGCAAATTCGAAA-AGTTGGGT 207
Query 202 CCTTCTGAATGGGGTC-ATCGATTCCTCTCTGCTCATGTTGATTTCTCAGAAATGGATGT 260
|||||||||||||| | ||| |||||| | ||||||||||||| |||||||||||||||
Sbjct 208 CCTTCTGAATGGGG-CAATCAATTCCTTTTTGCTCATGTTGATCTCTCAGAAATGGATGC 266
Query 261 GCTTGGGAGAGAGATAGAGGCACTAAAGCCGCAAA-TGAGGGACATGTTGATGTCTTCCA 319
||||| ||||||||| ||||||||||||||| ||| ||||||||||||| ||||||| ||
Sbjct 267 GCTTGAGAGAGAGATTGAGGCACTAAAGCCG-AAAGTGAGGGACATGTTCATGTCTTTCA 325
Query 320 AAGGCATTAAT-AAGTCGAGCAAGAAGAAAATCCTATTT-ATCTATTTGCTTGTGAGTCT 377
|||| ||| ||||||| ||||||| || | | ||| || |||||||||||||||||
Sbjct 326 AAGG----AATGAAGTCGAACAAGAAG-AATTTGTTTTTGATATATTTGCTTGTGAGTCT 380
Query 378 TGGTCTCGCGT-TTCATTTCGAGGATGAGATCGAGGAGAGTCT-AAAAGATGGTCTTCGA 435
||||||||| | |||||||||||||||||||||||||||| | ||| | || || | |
Sbjct 381 TGGTCTCGC-TCATCATTTCGAGGATGAGATCGAGGAGAGTGTCAAAGGTTGTTC-CCAA 438
Query 436 GAGATAGAGGAGATTATGG-CTGGTGAAGATGATTTGTACACAGTTTCCATCATCTTCTG 494
||||| | |||||| |||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 439 GAGATGGTGGAGATGATGGAC-GGTGAAAATGATTTGTACACAGTTTCCATCATCTTCTG 497
Query 495 GGTTTTCAGGACATATGGTCACAACATTTCTTCTG------------GA------G-ACA 535
||||||||||||||||||||||||||||||||||| || | |||
Sbjct 498 GGTTTTCAGGACATATGGTCACAACATTTCTTCTGATATTTTTAACAGATTTAAAGGACA 557
Query 536 -A-TGGAAAATTTAAGGAATGTCTTGCTAAAGATGCTAAGGGTATCCTGAGCTTGTATGA 593
| |||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 558 CAATGGAAAGTTTAAGGAATGTCTTGCCACCGATGCTAAGGGTATCCTAAGCTTGTATGA 617
Query 594 AGCTGCTCACATGGGGACGACAACAGATTATATATTGGATGAAGCCTTGAGCTTCACATT 653
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 618 AGCTGCTCACATGGGGACGACAACCGATTATATATTGGATGAAGCCTTGAGCTTCACATT 677
Query 654 GAGTAACTTGGAGTCGCTAGCTGCAAGTGGGACATGCAAACTTAACCTC-TCAAGACGTA 712
|||| ||||||||||| ||||||||| |||||||||||||| ||| ||| | | | ||||
Sbjct 678 GAGTTACTTGGAGTCGTTAGCTGCAAATGGGACATGCAAACCTAATCTCGTGAGG-CGTA 736
Query 713 TACGAAAAGCTTTGGATCAACCGCAGCATAAAAACATGGAGATATTAGTCGCAAAGGAAT 772
||||||| || |||| || |||| | || ||| ||||||||||||||||||||||||
Sbjct 737 TACGAAATGCATTGGGTCTTTTGCAGAACAAGAACGTGGAGATATTAGTCGCAAAGGAAT 796
Query 773 ATATCCG 779
|||||||
Sbjct 797 ATATCCG 803
Score = 521 bits (282), Expect = 6e-147
Identities = 362/401 (90%), Gaps = 4/401 (1%)
Strand=Plus/Plus
Query 1044 AGAATGCAAGAGAATGATGAGAAGCAATCTTCAACTGGCCAAATGGGCAGTAACGGGTCA 1103
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1275 AGATTGCAAGAGAATGATGAGAAGCAACCTTCAACTTGCCAAATGGGCAGTAACGGGTCA 1334
Query 1104 CTTGCCTAGCTTTGATGAGTACCTAGATGTTTCTGGTGTCGAGATCGCTC-TATATTTTA 1162
|||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||
Sbjct 1335 CTTGCCTAGCTTTGATGAGTACCTAGATGTCGCTGGAGTCGAGATCGC-CGTATATTTTA 1393
Query 1163 CCCTGGCATGTATTTTGATGGGTATGGAAAATATCTGCAAGAAAGAAGCTTATGAGTGGT 1222
|| ||||| |||||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct 1394 CCGTGGCAGGTATTTTGTTGGGCATGGAAAATATCAACAAGAAAGAAGCTTATGAGTGGT 1453
Query 1223 TGAAATCTAGAGACAAACTCGTTAGAGCATTGACCGCAAAAGCACGAGTGTTGAATGATA 1282
||| || ||||||||||||||| |||||| || | ||||||||||| || ||||||||
Sbjct 1454 TGATATTTAGAGACAAACTCGTAAGAGCAATGTCTACAAAAGCACGACTGGTGAATGATT 1513
Query 1283 TACTTGGCT-TCGAGGATGACATGAGCCGAGGATATGTCACGAACTCGATCAACTGTTAT 1341
| |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1514 TGTTTGGCTATA-AGGATGACATGAGGAGAGGATATGTCACGAACTCGATCAACTGTTAT 1572
Query 1342 AAGAAACAATATGGAGTTACAGAAGAAGAGGCTTTTAGAAAGCTTCATCAAATGGTTGCA 1401
||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1573 AAGAAGCAATATGGAGTTACCGAAGAAGAAGCCTTTAGAAAGCTTCATCAAATGGTTGCG 1632
Query 1402 GACCTTGATAAGATGATGAATGAGGAGTTTTTGAAGACAAT 1442
||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1633 GACGGTGATAAGATGATGAATGAGGAGTTTTTGAAGCCAAT 1673
Score = 315 bits (170), Expect = 1e-84
Identities = 239/272 (88%), Gaps = 6/272 (2%)
Strand=Plus/Plus
Query 779 GAGACAGAATCGTGGAAATGCACCTCGTTACACTAACATACTTCGAA-CCAAAATACTCA 837
||||||||||||||||| ||||||||| ||| ||| ||||| || || || |||||||||
Sbjct 959 GAGACAGAATCGTGGAACTGCACCTCGCTACGCTAGCATACATC-AATCCGAAATACTCA 1017
Query 838 CGTGTGAGGATCT-TTCTGACTAAGATTTATACGATTCAAATCATTGTAGATGATACGTG 896
||||||||||| | ||||||||| |||||| || |||||||| ||| |||||||||||||
Sbjct 1018 CGTGTGAGGAT-TATTCTGACTATGATTTACACTATTCAAATAATTCTAGATGATACGTG 1076
Query 897 TGACAGATATGCTTCTCTTGGTGAGGTTGAAAGCCTCGCAG-ATACAATCGAAAGGTGGG 955
||||||||||||||||||| ||||||| ||||||||||| | | || |||||||| ||||
Sbjct 1077 TGACAGATATGCTTCTCTTCGTGAGGTCGAAAGCCTCGCTGCA-ACCATCGAAAGATGGG 1135
Query 956 ATCCCGATGATCATGGCATAGATGAACTACCAGATTATTTAAAATCTGTAGTGAAATTTA 1015
||| | ||||||||| ||| || | |||||| ||||||||||||||||| | |||||||
Sbjct 1136 ATCACAATGATCATGCCATGGAGGGACTACCGGATTATTTAAAATCTGTGGCCAAATTTA 1195
Query 1016 TATTTGATACCTTCCAAGAGTTTGAAAGAGAA 1047
||||| ||||||||||||||||||||||||||
Sbjct 1196 TATTTCATACCTTCCAAGAGTTTGAAAGAGAA 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78061847475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5