BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913929

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases...   763    0.0  


> AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases 
| chr5:16760908-16764276 FORWARD LENGTH=1620
Length=1620

 Score =  763 bits (413),  Expect = 0.0
 Identities = 544/605 (90%), Gaps = 17/605 (3%)
 Strand=Plus/Plus

Query  1     ATGAACAAAGATCAGCAGTCT-CTGAATACTTCCGTGTTTATAAAGGGAAATGAGAACAG  59
             ||||||||||||||||||| | |||||||||| ||||||||| ||||||||||| |||| 
Sbjct  679   ATGAACAAAGATCAGCAGT-TGCTGAATACTTTCGTGTTTAT-AAGGGAAATGAAAACAA  736

Query  60    TGCCAAAAATGTCGATCTGATGGGTCATTCTCATCAACCGTTTCTCGCGAGATCATGTGT  119
             ||| ||||| |||||||||||||||||||||| ||| |||||||| |||||||||| |||
Sbjct  737   TGCAAAAAAGGTCGATCTGATGGGTCATTCTCTTCATCCGTTTCTTGCGAGATCATATGT  796

Query  120   GGACTTT-TTAAAGAATTTCTTTGAGGATGAGTTACATGCAACTCAAAGTATATTCTCAA  178
             ||||||| || |||| ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct  797   GGACTTTATT-AAGAGTTTCTTTGAGGGTGAGTTACAAGCAACTCAAAGTATATTCTCAA  855

Query  179   GCAAAGAAAAATATGAGAAGATACTTGGCATGATAACAGATGAAGATATTCAATCAGAGC  238
             |||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| |
Sbjct  856   GCAAAGAAAAGTATGAGAAGATACTTGGGATGATTACAGATGAAGATATTCAAGCAGACC  915

Query  239   TGAGAGGGGAGTGGAAGAATTCTGCGAGATCATCTCCATCAGAAGAAGCCACCAGCCTTT  298
             | |||||  ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  916   TCAGAGGAAAGTGGGAGAATTCTGCGAGATCATCTCTATCAGAAGAAGCCACCAGCCTTT  975

Query  299   TAAGGTGGGAGCAGCTTAA-AACGCT-T-CAATCAAAGA-ACAACAAGGCTCTATCACTG  354
             |||||||||| || ||||| || ||| | ||||| |||| | ||||||||||||||||||
Sbjct  976   TAAGGTGGGAACAACTTAAGAAAGCTCTTCAATCGAAGAGA-AACAAGGCTCTATCACTG  1034

Query  355   CGGACATGCGTAGAAGAAATTGTCTTCAACTTTATATATCCTCGAATTGATTTGGAGGTC  414
             ||||| |||||||||||||||||||||| |||||  ||||||||||||||||||||||| 
Sbjct  1035  CGGACGTGCGTAGAAGAAATTGTCTTCACCTTTACGTATCCTCGAATTGATTTGGAGGTT  1094

Query  415   TCCaaaa-aaaTGAACCATTTGCTTAAGGCACCCTTCTGTGTCCATCCAAACACAGGTCG  473
             || |||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct  1095  TC-AAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAGGTCG  1153

Query  474   TGTCTGTGTTCCTATTGATCCGAATAACTGCGATGAGTTTGATCCATTATTGGAAGTTCC  533
             |||||||||||||||||| ||||||||||| |||||||||||||||||   || ||||||
Sbjct  1154  TGTCTGTGTTCCTATTGACCCGAATAACTGTGATGAGTTTGATCCATT---GGCAGTTCC  1210

Query  534   AACACTTTCACAGATCATAGAAGAAATCAACTCAGCAGGCCTCA-ATATGGATGTGGATG  592
             ||| ||||||||| | |||||||||||||| || |  ||||||| | ||||| |||||||
Sbjct  1211  AACTCTTTCACAGCTAATAGAAGAAATCAATTCCGGTGGCCTCAGA-ATGGACGTGGATG  1269

Query  593   ATGAT  597
             |||||
Sbjct  1270  ATGAT  1274



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28733932084


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5