BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913929 Length=597 Score E Sequences producing significant alignments: (Bits) Value AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases... 763 0.0 > AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases | chr5:16760908-16764276 FORWARD LENGTH=1620 Length=1620 Score = 763 bits (413), Expect = 0.0 Identities = 544/605 (90%), Gaps = 17/605 (3%) Strand=Plus/Plus Query 1 ATGAACAAAGATCAGCAGTCT-CTGAATACTTCCGTGTTTATAAAGGGAAATGAGAACAG 59 ||||||||||||||||||| | |||||||||| ||||||||| ||||||||||| |||| Sbjct 679 ATGAACAAAGATCAGCAGT-TGCTGAATACTTTCGTGTTTAT-AAGGGAAATGAAAACAA 736 Query 60 TGCCAAAAATGTCGATCTGATGGGTCATTCTCATCAACCGTTTCTCGCGAGATCATGTGT 119 ||| ||||| |||||||||||||||||||||| ||| |||||||| |||||||||| ||| Sbjct 737 TGCAAAAAAGGTCGATCTGATGGGTCATTCTCTTCATCCGTTTCTTGCGAGATCATATGT 796 Query 120 GGACTTT-TTAAAGAATTTCTTTGAGGATGAGTTACATGCAACTCAAAGTATATTCTCAA 178 ||||||| || |||| ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 797 GGACTTTATT-AAGAGTTTCTTTGAGGGTGAGTTACAAGCAACTCAAAGTATATTCTCAA 855 Query 179 GCAAAGAAAAATATGAGAAGATACTTGGCATGATAACAGATGAAGATATTCAATCAGAGC 238 |||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| | Sbjct 856 GCAAAGAAAAGTATGAGAAGATACTTGGGATGATTACAGATGAAGATATTCAAGCAGACC 915 Query 239 TGAGAGGGGAGTGGAAGAATTCTGCGAGATCATCTCCATCAGAAGAAGCCACCAGCCTTT 298 | ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 916 TCAGAGGAAAGTGGGAGAATTCTGCGAGATCATCTCTATCAGAAGAAGCCACCAGCCTTT 975 Query 299 TAAGGTGGGAGCAGCTTAA-AACGCT-T-CAATCAAAGA-ACAACAAGGCTCTATCACTG 354 |||||||||| || ||||| || ||| | ||||| |||| | |||||||||||||||||| Sbjct 976 TAAGGTGGGAACAACTTAAGAAAGCTCTTCAATCGAAGAGA-AACAAGGCTCTATCACTG 1034 Query 355 CGGACATGCGTAGAAGAAATTGTCTTCAACTTTATATATCCTCGAATTGATTTGGAGGTC 414 ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1035 CGGACGTGCGTAGAAGAAATTGTCTTCACCTTTACGTATCCTCGAATTGATTTGGAGGTT 1094 Query 415 TCCaaaa-aaaTGAACCATTTGCTTAAGGCACCCTTCTGTGTCCATCCAAACACAGGTCG 473 || |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1095 TC-AAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAGGTCG 1153 Query 474 TGTCTGTGTTCCTATTGATCCGAATAACTGCGATGAGTTTGATCCATTATTGGAAGTTCC 533 |||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||| Sbjct 1154 TGTCTGTGTTCCTATTGACCCGAATAACTGTGATGAGTTTGATCCATT---GGCAGTTCC 1210 Query 534 AACACTTTCACAGATCATAGAAGAAATCAACTCAGCAGGCCTCA-ATATGGATGTGGATG 592 ||| ||||||||| | |||||||||||||| || | ||||||| | ||||| ||||||| Sbjct 1211 AACTCTTTCACAGCTAATAGAAGAAATCAATTCCGGTGGCCTCAGA-ATGGACGTGGATG 1269 Query 593 ATGAT 597 ||||| Sbjct 1270 ATGAT 1274 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28733932084 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5