BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913964

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04420.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   697    0.0  


> AT5G04420.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr5:1246604-1249943 REVERSE LENGTH=2025
Length=2025

 Score =  697 bits (377),  Expect = 0.0
 Identities = 483/532 (91%), Gaps = 16/532 (3%)
 Strand=Plus/Plus

Query  1    ATGGAAGACATCAGGAAAGAAATAGATTTTGGTGATTGGCATTCAAATCTCGCTCACGAT  60
            |||||||| |||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct  218  ATGGAAGAGATCAGGAAAGAAATAGATGTCGGTGATTGGCATTCAAATCTAGCTCACGAT  277

Query  61   GAATGGACACCACTCCCTGTTTCCGGCTCACCAGCATCAGCTCG---CTA-CA------A  110
            ||||||||||||||||||||||| ||||| | ||||||||||||   | | ||      |
Sbjct  278  GAATGGACACCACTCCCTGTTTCTGGCTCTCGAGCATCAGCTCGTTACAAGCATGCGGCA  337

Query  111  GT--TTCTCCCT-A-AACCTTTTCGTGTGTTCTCTGGAAGCCGTAATGGCCGATACTTAT  166
            ||  || |   | | || || | | | ||||   ||||||||| ||||||||||||||||
Sbjct  338  GTGGTTGTTGATGAGAAGCTCTACAT-TGTT-GGTGGAAGCCGGAATGGCCGATACTTAT  395

Query  167  CTGATGTCCAGGTGTTTGATCTTAGAAGTTTGACTTGGTCGAGTTTGAAACTGAAAACTG  226
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  396  CTGATGTCCAGGTGTTTGATCTTAGAAGTTTGACTTGGTCTAGTTTGAAACTGAAAACTG  455

Query  227  AATCATCAAGTACTGAGAACATTCAAGAGGATGATGGTAGCAGTTTACGGGAAGCTTTTT  286
            ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| 
Sbjct  456  AATCATCAAGTGCTGATAACATTCAAGAGGATGATGGTAGCAGCTTACGGGAAGCTTTTC  515

Query  287  CTGCTATTTCAGACCACCGCATGATTAAGTGGGGAAACAAGCTTCTTTTGATTGGGGGAC  346
            |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct  516  CTGCTATTTCAGACCATCGCATGATTAAGTGGGGAAACAAGCTTCTTTTGATCGGGGGAC  575

Query  347  ACTCCAAGAAGTCATCAGATAACATGTCAGTGTGGTTCATTGATTTGGAAACACATTTAT  406
            ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||
Sbjct  576  ACTCCAAGAAGTCATCAGATAACATGTTAGTGCGGTTCATTGATTTGGAAACACATTCAT  635

Query  407  GTGGAGTCATTGATGTGTCTGGGAATGTTCCAGCTTCACGTGGTGGACATTCCATTACAC  466
            |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct  636  GTGGAGTCATTGATGTGTTTGGGAATGTTCCGGCTTCACGTGGTGGACATTCCATTACAC  695

Query  467  TGGTTGGATCCGGAGTGCTTGTTTTTGGTGGGGAAGATAAGAACAGGAGACT  518
            ||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct  696  TGGTTGGATCCCGAGTTCTTGTTTTTGGTGGGGAAGATAAGAACAGGAGACT  747



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5