BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913994
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49330.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 996 0.0
> AT1G49330.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:18250043-18251038 FORWARD LENGTH=996
Length=996
Score = 996 bits (539), Expect = 0.0
Identities = 724/813 (89%), Gaps = 13/813 (2%)
Strand=Plus/Plus
Query 55 ATCCGTCC-GAAGACGTCACCGGTTCGTAAAGCTCCACCACCGGAGTTCGCTGGACCTAT 113
|||||||| | || ||||||||||| || ||||||||||||||| ||| |||||||| |
Sbjct 175 ATCCGTCCTG-TGAAGTCACCGGTTCCTATAGCTCCACCACCGGAATTCCCTGGACCTGT 233
Query 114 GACAACGTGGCCAACACCTGCTGATTTAT-TGGCGGCGCGTTCTATGCCGCCTTATCCCA 172
||||||||||||||||||||||||||| | ||||| |||| |||||| |||| |||||
Sbjct 234 GACAACGTGGCCAACACCTGCTGATTT-TCTGGCGACGCGGTCTATGGTGCCTGATCCCC 292
Query 173 CTCCGCCGCCGCATCTGATACCGTCATGGATGAGTGACTATCCTCATCACCAGACACCGA 232
|||||||| | |||| |||||| | ||||||||| ||||| | ||| ||||||||||
Sbjct 293 CTCCGCCGTCTCATCAGATACCTTTATGGATGAGCAACTAT--T-TTCAACAGACACCGA 349
Query 233 ATCCGCCTCAGCTGTTTACTAATTTCTTCCCGCCGTCAAGTTTCGCTCCTA-CTCCGTCA 291
|||||||||||||| ||||| ||||||||||||||||| |||| ||||| | || |||||
Sbjct 350 ATCCGCCTCAGCTGGTTACTCATTTCTTCCCGCCGTCAGGTTTAGCTCC-ACCTTCGTCA 408
Query 292 AATCTAACTACTCCGCCGGCGATCAGACCAGTAACCGCTTCCGTTCGTGGTTACAGATCA 351
||||||||| ||||||||| || ||||||||||||| |||||||||| ||| ||||||
Sbjct 409 AATCTAACTCCTCCGCCGGTGAAGAGACCAGTAACCGGTTCCGTTCGTATTTATAGATCA 468
Query 352 CAATCCACCGCAAATCAGAAATCCGGTACGATTTCTCCGCCGTTTCCTTGGGCGACTAAT 411
| ||| |||| || | ||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 469 CGATCAACCGTAAGTAAGAAATCCGATACGATTTCTCCGCCGTTTCCATGGGCGACTAAT 528
Query 412 TACCGTGGGCAGATACAAAGCCTTGAGTATCTCGAATCGAAACAGATCACAACCATCACC 471
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 529 CGCCGTGGGGAGATACAAAGCCTTGAGTATCTCGAATCGAATCAGATCACAACCATCACC 588
Query 472 GGAGAGGTACAATGTCGACACTGCGAGAATGTTTATCCGGTAAGCTACAATCTAAAGGAG 531
||||||||||||||||||||||||||||| || |||| ||| ||||||||||||| ||||
Sbjct 589 GGAGAGGTACAATGTCGACACTGCGAGAAAGTGTATCAGGTTAGCTACAATCTAAGGGAG 648
Query 532 AGATTCGCGGAGGTTGAGAAGATTTTCTTAAATAG-GAAGAGGATAATGAGGGAAAGAGC 590
|||||||| ||||||| |||| |||| || | | |||||||| ||||||||| |||||
Sbjct 649 AGATTCGCTGAGGTTGTGAAG-TTTTATTTGACGGAGAAGAGGAAAATGAGGGACAGAGC 707
Query 591 TCCT-TCGATTTGGCTGAATCCAGAACAACGGAGATGTGAGCTTTGTGGCCGTGAAAAAG 649
|| | |||| ||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 708 TCATAAGGATTGGGC-GTATCCAGAGCAACGGAGATGTGAGCTTTGTGGCCGTGAAAAAG 766
Query 650 CTGTGAAACCTGTGATTGCTGAACGGAAAAGTCAGATTAATTGGTTGTTTTTGCTTTTGG 709
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CTGTGAAACCGGTGATTGCTGAACGGAAAAGTCAGATTAATTGGTTGTTTTTGCTTTTGG 826
Query 710 GACAAACGTTGGGTTTTTGTACATTGGAACAGCTCAAGAATTTCTGCAAACATTCAAAGA 769
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 827 GACAAACGTTGGGTTTTTGTACATTGGAGCAGCTTAAGAATTTCTGCAAACATTCCAAGA 886
Query 770 GTCATCGTACTGGCGCTAAAGATCGTGTTCTTTACTTGACGTATTTGGGTCTCTGCAAGA 829
|||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 887 ATCATCGTACTGGTGCTAAGGATCGTGTTCTTTACTTGACGTATATGGGTCTCTGCAAGA 946
Query 830 TGCTTCAGCCTAAATGTGACCTCTTTACCCGTG 862
||||||||||||||| ||||||||||||| |||
Sbjct 947 TGCTTCAGCCTAAATCTGACCTCTTTACCTGTG 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5