BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913994 Length=885 Score E Sequences producing significant alignments: (Bits) Value AT1G49330.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 996 0.0 > AT1G49330.1 | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:18250043-18251038 FORWARD LENGTH=996 Length=996 Score = 996 bits (539), Expect = 0.0 Identities = 724/813 (89%), Gaps = 13/813 (2%) Strand=Plus/Plus Query 55 ATCCGTCC-GAAGACGTCACCGGTTCGTAAAGCTCCACCACCGGAGTTCGCTGGACCTAT 113 |||||||| | || ||||||||||| || ||||||||||||||| ||| |||||||| | Sbjct 175 ATCCGTCCTG-TGAAGTCACCGGTTCCTATAGCTCCACCACCGGAATTCCCTGGACCTGT 233 Query 114 GACAACGTGGCCAACACCTGCTGATTTAT-TGGCGGCGCGTTCTATGCCGCCTTATCCCA 172 ||||||||||||||||||||||||||| | ||||| |||| |||||| |||| ||||| Sbjct 234 GACAACGTGGCCAACACCTGCTGATTT-TCTGGCGACGCGGTCTATGGTGCCTGATCCCC 292 Query 173 CTCCGCCGCCGCATCTGATACCGTCATGGATGAGTGACTATCCTCATCACCAGACACCGA 232 |||||||| | |||| |||||| | ||||||||| ||||| | ||| |||||||||| Sbjct 293 CTCCGCCGTCTCATCAGATACCTTTATGGATGAGCAACTAT--T-TTCAACAGACACCGA 349 Query 233 ATCCGCCTCAGCTGTTTACTAATTTCTTCCCGCCGTCAAGTTTCGCTCCTA-CTCCGTCA 291 |||||||||||||| ||||| ||||||||||||||||| |||| ||||| | || ||||| Sbjct 350 ATCCGCCTCAGCTGGTTACTCATTTCTTCCCGCCGTCAGGTTTAGCTCC-ACCTTCGTCA 408 Query 292 AATCTAACTACTCCGCCGGCGATCAGACCAGTAACCGCTTCCGTTCGTGGTTACAGATCA 351 ||||||||| ||||||||| || ||||||||||||| |||||||||| ||| |||||| Sbjct 409 AATCTAACTCCTCCGCCGGTGAAGAGACCAGTAACCGGTTCCGTTCGTATTTATAGATCA 468 Query 352 CAATCCACCGCAAATCAGAAATCCGGTACGATTTCTCCGCCGTTTCCTTGGGCGACTAAT 411 | ||| |||| || | ||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 469 CGATCAACCGTAAGTAAGAAATCCGATACGATTTCTCCGCCGTTTCCATGGGCGACTAAT 528 Query 412 TACCGTGGGCAGATACAAAGCCTTGAGTATCTCGAATCGAAACAGATCACAACCATCACC 471 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 529 CGCCGTGGGGAGATACAAAGCCTTGAGTATCTCGAATCGAATCAGATCACAACCATCACC 588 Query 472 GGAGAGGTACAATGTCGACACTGCGAGAATGTTTATCCGGTAAGCTACAATCTAAAGGAG 531 ||||||||||||||||||||||||||||| || |||| ||| ||||||||||||| |||| Sbjct 589 GGAGAGGTACAATGTCGACACTGCGAGAAAGTGTATCAGGTTAGCTACAATCTAAGGGAG 648 Query 532 AGATTCGCGGAGGTTGAGAAGATTTTCTTAAATAG-GAAGAGGATAATGAGGGAAAGAGC 590 |||||||| ||||||| |||| |||| || | | |||||||| ||||||||| ||||| Sbjct 649 AGATTCGCTGAGGTTGTGAAG-TTTTATTTGACGGAGAAGAGGAAAATGAGGGACAGAGC 707 Query 591 TCCT-TCGATTTGGCTGAATCCAGAACAACGGAGATGTGAGCTTTGTGGCCGTGAAAAAG 649 || | |||| ||| | ||||||| |||||||||||||||||||||||||||||||||| Sbjct 708 TCATAAGGATTGGGC-GTATCCAGAGCAACGGAGATGTGAGCTTTGTGGCCGTGAAAAAG 766 Query 650 CTGTGAAACCTGTGATTGCTGAACGGAAAAGTCAGATTAATTGGTTGTTTTTGCTTTTGG 709 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 767 CTGTGAAACCGGTGATTGCTGAACGGAAAAGTCAGATTAATTGGTTGTTTTTGCTTTTGG 826 Query 710 GACAAACGTTGGGTTTTTGTACATTGGAACAGCTCAAGAATTTCTGCAAACATTCAAAGA 769 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| Sbjct 827 GACAAACGTTGGGTTTTTGTACATTGGAGCAGCTTAAGAATTTCTGCAAACATTCCAAGA 886 Query 770 GTCATCGTACTGGCGCTAAAGATCGTGTTCTTTACTTGACGTATTTGGGTCTCTGCAAGA 829 |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 887 ATCATCGTACTGGTGCTAAGGATCGTGTTCTTTACTTGACGTATATGGGTCTCTGCAAGA 946 Query 830 TGCTTCAGCCTAAATGTGACCTCTTTACCCGTG 862 ||||||||||||||| ||||||||||||| ||| Sbjct 947 TGCTTCAGCCTAAATCTGACCTCTTTACCTGTG 979 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43201366420 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5